Table 2 Statistics of MinION™ sequencing data for human fecal samples
Sample | Pass reads | Trimmed reads | Filtered reads | ||||||
|---|---|---|---|---|---|---|---|---|---|
No. of reads | Min (bp) | Avg (bp) | Max (bp) | No. of reads | Avg (bp) | No. of reads | Avg (bp) | Q score | |
F1/N V1-V9 | 104,895 | 186 | 1521.1 | 4549 | 103,100 | 1386.4 | 89,752 (85.6%) | 1463.7 | 9.4 |
F2/N V1-V9 | 84,065 | 169 | 1393.8 | 4253 | 82,458 | 1259.8 | 60,326 (71.8%) | 1461.4 | 9.4 |
F3/N V1-V9 | 76,968 | 168 | 1474.3 | 4829 | 74,479 | 1343.3 | 60,713 (78.9%) | 1465.5 | 9.4 |
F4/N V1-V9 | 114,060 | 168 | 1541.7 | 4836 | 111,436 | 1410.6 | 100,569 (88.2%) | 1469.9 | 9.4 |
F5/N V1-V9 | 85,912 | 177 | 1536.0 | 4877 | 83,038 | 1405.4 | 74,168 (86.3%) | 1474.2 | 9.4 |
F6/N V1-V9 | 108,938 | 213 | 1525.1 | 4866 | 106,857 | 1393.5 | 93,146 (85.5%) | 1467.4 | 9.4 |
F1/N V3-V4 | 52,864 | 160 | 568.8 | 2759 | 52,283 | 435.2 | 48,494 (91.7%) | 442.5 | 9.1 |
F2/N V3-V4 | 92,816 | 174 | 583.4 | 2886 | 91,989 | 442.8 | 89,016 (95.9%) | 444.7 | 9.2 |
F3/N V3-V4 | 60,200 | 163 | 568.5 | 2062 | 59,435 | 434.6 | 55,706 (92.5%) | 441.1 | 9.2 |
F4/N V3-V4 | 83,021 | 202 | 578.0 | 2050 | 81,734 | 446.1 | 77,995 (93.9%) | 450.0 | 9.2 |
F5/N V3-V4 | 78,409 | 167 | 578.4 | 1796 | 76,135 | 447.8 | 72,526 (92.5%) | 453.1 | 9.2 |
F6/N V3-V4 | 74,931 | 114 | 580.3 | 2246 | 73,946 | 446.1 | 71,330 (95.2%) | 449.1 | 9.2 |