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Table 1 SMART-PCR and SeqSero results

From: Serotyping of sub-Saharan Africa Salmonella strains isolated from poultry feces using multiplex PCR and whole genome sequencing

Sample ID Serogroup SMART PCR code Serotype by SMART Antigenic serotype by SeqSero2 Serotype by SeqSero2
S38 C2-C3 1–2–5-6-11 Dusseldorf 8:z4,z24:- Albany or Duesseldorf
S39 B 1–5–7-9-11-16 new code 4:e,h:e,n,x Chester
S40 E1 1–2–5-7-11-13 new code 3,10:z29:- Jedburgh
S47 B 1–2–5-6-10-11 new code 4:g,m,s:- Hato
S52 B 1–5–7-9-11-16 new code 4:i:1,2 Typhimurium
S53 B 1–2–5-6-11 new code 4:g,m,s:- Hato
S58 G 1–5–6-7-11-16 Telelkebir 13:d:e,n,z15 Telelkebir
S59 B 1–2–5-6-7-8-11-12-13-14-16 Typhimurium 4:i:1,2 Typhimurium
S60 G 1–5–6-7-9-11-16 new code 13:d:e,n,z15 Telelkebir
S61 D1 1–2–3-5-6-11-14-15 Enteritidis 9:g,m:- Enteritidis
S62 D1 1–2–3-5-6-11-14-15 Enteritidis 9:g,m:- Enteritidis
S63 B 1–2–5-6-11 new code 4:g,m,s:- Hato
S64 B 1–2–5-11-13 Agona 4:f,g,s:- Agona
S65 B 1–2–5-6-11-13 new code 4:f,g:- Derby
S66 E4 1–2–5-6-11-13-16 new code 1,3,19:f,g:1,5 N/A
S67 B 1–5–7-9-11-16 new code 4:e,h:e,n,x Chester
S68 B 1–2–5-6-10-11 new code 4:g,m,s:- Hato
S69 C2-C3 1–2–5-10-11-13-16 new code 4:i:1,2 Typhimurium
S70 B 1–2–5-6-11 new code 4:f,g:- Derby
S71 C1 1–5–7-11-13-16 Virchow 7:r:1,2 Virchow
S72 M 1–2–5-11-13-16 new code 28:d:1,5 Amoutive
S74 C2-C3 1–2–5-10-11-13-16 new code 8:i:z6 Kentucky
S75 B 1–2–5-6-7-8-11-12-13-14-16 Typhimurium 4:i:1,2 Typhimurium
S80 B 1–2–5-6-10-11 new code 4:f,g:- Derby
S82 B 1–5–7-9-11-16 new code 4:e,h:e,n,x Chester
S83 B 1–2–5-6-7-8-11-12-13-14-16 Typhimurium 4:i:1,2 Typhimurium
S86 B 1–2–5-6-7-10-11-13 new code 4:z29:- Brancaster
S90 I 1–5–6-10-11-16 Gaminara 16:d:1,7 Gaminara
S91 B 1–2–5-6-7-10-11-13 new code 16:d:1,8 Gaminara
S92 B 1–2–5-6-7-10-11-13 new code 4:f,g:- Derby
S93 B 1–5–6-7-11-16 Schwarzengrund 4:d:1,7 Schwarzengrund
S94 B 1–2–5-6-11-13 new code 4:f,g:- Derby
S96 Poly D 1–5–6-7-11-13-16 new code 4:z29:- Brancaster
S97 B 1–2–5-6-11-13 new code 4:f,g:- Derby
S99 E1 1–2–5-6-7-11-16 new code 3,10:e,h:1,6 Anatum
S102 B 1–5–6-7-10-11-16 Bredeney 4:l,v:1,7 Bredeney
S103 E4 1–5–7-11-16 Liverpool 4:f,g:- Derby
S104 polyE 1–2–5-6-9-11 new code 47:z38:- Alexanderplatz
S105 B 1–2–5-6-7-10-11-13 new code 4:f,g:- Derby
S106 C2-C3 1–2–5-10-11-16 new code 8:i:z6 Kentucky
S107 B 1–5–6-7-10-11-16 Bredeney 4:l,v:1,7 Bredeney
S108 C1 1–2–5-11-13 new code 7:z29:- Tennessee
S109 B 1–2–5-6-7-10-11-13 new code 4:f,g:- Derby
S110 D1 1–3–5-7-10-11-16 new code 9:e,h:1,5 Eastbourne
S111 C1 1–2–5-11-13 new code 7:z29:- Tennessee
S112 B 1–2–5-6-8-11-13 new code 4:g,m,s:- Hato
S114 B 1–2–5-6-8-11-13 new code 4:g,m,s:- Hato
S115 B 1–2–5-6-11-13 new code 4:f,g:- Derby
S118 G 1–6–7-9-11-16 Poona 13:z:1,6 Poona
S120 B 1–2–5-6-7-10-11-13 new code 4:f,g:- Derby
S121 G 1–6–7-9-11-16 Poona 13:z:1,6 Poona
S123 B 1–5–6-7-10-11-16 Bredeney 4:l,v:1,7 Bredeney
S124 B 1–2–5-6-11-13 new code 4:f,g:- Derby
S125 B 1–2–5-6-8-11-13 new code 4:g,m,s:- Hato
S126 C2-C3 1–2–5-10-11-16 new code 8:i:z6 Kentucky
S132 B 1–2–5-6-7-10-11-13 new code 4:f,g:- Derby
S133 B 1–2–5-6-7-10-11-13 new code 4:f,g:- Derby
S140 PolyE 1–2–5-6-9-11 new code 47:z38:- Alexanderplatz
S143 PolyE 1–2–5-6-9-11 new code 47:z38:- Alexanderplatz
S145 C1 1–2–5-11-13 new code 7:z29:- Tennessee
S146 C1 1–2–5-6-10-11-13 Tennessee 7:z29:- Tennessee
S147 PolyE 1–5–6-7-9-11-16 new code 47:l,v:e,n,x Drac
S148 E1 1–5–6-7-10-11-16 new code 3,10:e,h:1,5 Muenster
S149 E1 1–5–6-7-10-11-16 new code 3,10:e,h:1,6 Muenster
S150 E1 1–5–6-7-9-11-16 Muenster 3,10:e,h:1,5 Muenster
S151 E1 1–5–6-7-9-11-16 Muenster 3,10:e,h:1,6 Muenster
S152 D1 1–5–6-7-9-11-16 Muenster 3,10:e,h:1,5 Muenster
S153 E1 1–5–6-7-9-11-16 Muenster 3,10:e,h:1,5 Muenster
S154 E1 1–5–6-7-10-11-16 new code 3,10:e,h:1,5 Muenster
S155 G 1–7–9-10-11-16 new code 39:f,g:e,n,z15 N/A
S156 G 1–7–9-10-11-16 new code 13:z:1,6 Poona
S162 E4 1–5–6-7-11-13 new code 1,3,19:b:- N/A
S163 B 1–2–5-6-11-13 new code 4:f,g:- Derby
S164 E4 1–5–6-7-11-13 new code 1,3,19:b:- N/A
S165 B 1–2–5-6-11-13 new code 4:f,g:- Derby
S167 E4 1–5–6-7-11-13 new code 1,3,19:b:- N/A
S168 B 1–2–5-6-7-8-11-12-13-14-16 Typhimurium 4:i:1,2 Typhimurium
S169 B 1–2–5-6-7-10-11 new code 4:g,m,s:- Hato
S170 B 1–2–5-6-11-13 new code 4:f,g:- Derby
S171 B 1–2–5-6-10-11-13 new code 7:z29:- Tennessee
S172 C2-C3 1–2–5-10-11-13-16 new code 8:i:z6 Kentucky
S183 B 1–2–5-6-11-13 new code 4:f,g:- Derby
S184 B 1–2–5-6-11 new code 4:g,m,s:- Hato
S185 B 1–2–5-6-11 new code 4:g,m,s:- Hato
S186 B 1–2–5-6-11 new code 4:g,m,s:- Hato
S187 B 1–2–4-5-6-11 new code 4:g,m,s:- Hato
S188 B 1–2–5-6-11 new code 4:g,m,s:- Hato
S191 B 1–2–5-6-11 new code 4:g,m,s:- Hato
S194 B 1–2–5-6-11 new code 4:g,m,s:- Hato
S196 B 1–2–5-6-11 new code 4:g,m,s:- Hato
S197 B 1–2–5-6-11 new code 4:g,m,s:- Hato
S198 B 1–2–5-6-11-13 new code 4:f,g:- Derby
S199 B 1–2–5-6-11-13 new code 4:f,g:- Derby
S200 B 1–2–5-6-11 new code 4:g,m,s:- Hato
S201 B 1–2–5-6-11 new code 4:g,m,s:- Hato
S202 B 1–2–5-6-11 new code 4:g,m,s:- Hato
S203 B 1–2–5-6-11 new code 4:g,m,s:- Hato
S204 B 1–2–5-6-11 new code 4:g,m,s:- Hato
S207 B 1–2–5-6-11 new code 4:g,m,s:- Hato
S208 B 1–2–5-6-11 new code 4:g,m,s:- Hato
S209 B 1–2–5-6-11 new code 4:g,m,s:- Hato
S212 B 1–2–5-6-11 new code 4:g,m,s:- Hato
S216 B 1–2–5-6-11 new code 4:g,m,s:- Hato
S219 B 1–2–5-6-11 new code 4:g,m,s:- Hato
S248 B 1–2–5-6-10-11 new code 4:f,g:- Derby
S249 B 1–2–5-6-10-11 new code 4:f,g:- Derby
S251 B 1–2–5-6-10-11-13 new code 4:f,g:- Derby
S252 C1 1–2–5-11-13 new code 7:z29:- Tennessee
S253 E4 1–5–6-7-11-13 new code 1,3,19:b:- N/A
S254 B 1–2–5-10-11-13-16 new code 8:i:z6 Kentucky
S255 C2-C3 1–2–5-10-11-13-16 new code 4:i:1,2 Typhimurium