Table 1 SMART-PCR and SeqSero results
Sample ID | Serogroup | SMART PCR code | Serotype by SMART | Antigenic serotype by SeqSero2 | Serotype by SeqSero2 |
|---|---|---|---|---|---|
S38 | C2-C3 | 1–2–5-6-11 | Dusseldorf | 8:z4,z24:- | Albany or Duesseldorf |
S39 | B | 1–5–7-9-11-16 | new code | 4:e,h:e,n,x | Chester |
S40 | E1 | 1–2–5-7-11-13 | new code | 3,10:z29:- | Jedburgh |
S47 | B | 1–2–5-6-10-11 | new code | 4:g,m,s:- | Hato |
S52 | B | 1–5–7-9-11-16 | new code | 4:i:1,2 | Typhimurium |
S53 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
S58 | G | 1–5–6-7-11-16 | Telelkebir | 13:d:e,n,z15 | Telelkebir |
S59 | B | 1–2–5-6-7-8-11-12-13-14-16 | Typhimurium | 4:i:1,2 | Typhimurium |
S60 | G | 1–5–6-7-9-11-16 | new code | 13:d:e,n,z15 | Telelkebir |
S61 | D1 | 1–2–3-5-6-11-14-15 | Enteritidis | 9:g,m:- | Enteritidis |
S62 | D1 | 1–2–3-5-6-11-14-15 | Enteritidis | 9:g,m:- | Enteritidis |
S63 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
S64 | B | 1–2–5-11-13 | Agona | 4:f,g,s:- | Agona |
S65 | B | 1–2–5-6-11-13 | new code | 4:f,g:- | Derby |
S66 | E4 | 1–2–5-6-11-13-16 | new code | 1,3,19:f,g:1,5 | N/A |
S67 | B | 1–5–7-9-11-16 | new code | 4:e,h:e,n,x | Chester |
S68 | B | 1–2–5-6-10-11 | new code | 4:g,m,s:- | Hato |
S69 | C2-C3 | 1–2–5-10-11-13-16 | new code | 4:i:1,2 | Typhimurium |
S70 | B | 1–2–5-6-11 | new code | 4:f,g:- | Derby |
S71 | C1 | 1–5–7-11-13-16 | Virchow | 7:r:1,2 | Virchow |
S72 | M | 1–2–5-11-13-16 | new code | 28:d:1,5 | Amoutive |
S74 | C2-C3 | 1–2–5-10-11-13-16 | new code | 8:i:z6 | Kentucky |
S75 | B | 1–2–5-6-7-8-11-12-13-14-16 | Typhimurium | 4:i:1,2 | Typhimurium |
S80 | B | 1–2–5-6-10-11 | new code | 4:f,g:- | Derby |
S82 | B | 1–5–7-9-11-16 | new code | 4:e,h:e,n,x | Chester |
S83 | B | 1–2–5-6-7-8-11-12-13-14-16 | Typhimurium | 4:i:1,2 | Typhimurium |
S86 | B | 1–2–5-6-7-10-11-13 | new code | 4:z29:- | Brancaster |
S90 | I | 1–5–6-10-11-16 | Gaminara | 16:d:1,7 | Gaminara |
S91 | B | 1–2–5-6-7-10-11-13 | new code | 16:d:1,8 | Gaminara |
S92 | B | 1–2–5-6-7-10-11-13 | new code | 4:f,g:- | Derby |
S93 | B | 1–5–6-7-11-16 | Schwarzengrund | 4:d:1,7 | Schwarzengrund |
S94 | B | 1–2–5-6-11-13 | new code | 4:f,g:- | Derby |
S96 | Poly D | 1–5–6-7-11-13-16 | new code | 4:z29:- | Brancaster |
S97 | B | 1–2–5-6-11-13 | new code | 4:f,g:- | Derby |
S99 | E1 | 1–2–5-6-7-11-16 | new code | 3,10:e,h:1,6 | Anatum |
S102 | B | 1–5–6-7-10-11-16 | Bredeney | 4:l,v:1,7 | Bredeney |
S103 | E4 | 1–5–7-11-16 | Liverpool | 4:f,g:- | Derby |
S104 | polyE | 1–2–5-6-9-11 | new code | 47:z38:- | Alexanderplatz |
S105 | B | 1–2–5-6-7-10-11-13 | new code | 4:f,g:- | Derby |
S106 | C2-C3 | 1–2–5-10-11-16 | new code | 8:i:z6 | Kentucky |
S107 | B | 1–5–6-7-10-11-16 | Bredeney | 4:l,v:1,7 | Bredeney |
S108 | C1 | 1–2–5-11-13 | new code | 7:z29:- | Tennessee |
S109 | B | 1–2–5-6-7-10-11-13 | new code | 4:f,g:- | Derby |
S110 | D1 | 1–3–5-7-10-11-16 | new code | 9:e,h:1,5 | Eastbourne |
S111 | C1 | 1–2–5-11-13 | new code | 7:z29:- | Tennessee |
S112 | B | 1–2–5-6-8-11-13 | new code | 4:g,m,s:- | Hato |
S114 | B | 1–2–5-6-8-11-13 | new code | 4:g,m,s:- | Hato |
S115 | B | 1–2–5-6-11-13 | new code | 4:f,g:- | Derby |
S118 | G | 1–6–7-9-11-16 | Poona | 13:z:1,6 | Poona |
S120 | B | 1–2–5-6-7-10-11-13 | new code | 4:f,g:- | Derby |
S121 | G | 1–6–7-9-11-16 | Poona | 13:z:1,6 | Poona |
S123 | B | 1–5–6-7-10-11-16 | Bredeney | 4:l,v:1,7 | Bredeney |
S124 | B | 1–2–5-6-11-13 | new code | 4:f,g:- | Derby |
S125 | B | 1–2–5-6-8-11-13 | new code | 4:g,m,s:- | Hato |
S126 | C2-C3 | 1–2–5-10-11-16 | new code | 8:i:z6 | Kentucky |
S132 | B | 1–2–5-6-7-10-11-13 | new code | 4:f,g:- | Derby |
S133 | B | 1–2–5-6-7-10-11-13 | new code | 4:f,g:- | Derby |
S140 | PolyE | 1–2–5-6-9-11 | new code | 47:z38:- | Alexanderplatz |
S143 | PolyE | 1–2–5-6-9-11 | new code | 47:z38:- | Alexanderplatz |
S145 | C1 | 1–2–5-11-13 | new code | 7:z29:- | Tennessee |
S146 | C1 | 1–2–5-6-10-11-13 | Tennessee | 7:z29:- | Tennessee |
S147 | PolyE | 1–5–6-7-9-11-16 | new code | 47:l,v:e,n,x | Drac |
S148 | E1 | 1–5–6-7-10-11-16 | new code | 3,10:e,h:1,5 | Muenster |
S149 | E1 | 1–5–6-7-10-11-16 | new code | 3,10:e,h:1,6 | Muenster |
S150 | E1 | 1–5–6-7-9-11-16 | Muenster | 3,10:e,h:1,5 | Muenster |
S151 | E1 | 1–5–6-7-9-11-16 | Muenster | 3,10:e,h:1,6 | Muenster |
S152 | D1 | 1–5–6-7-9-11-16 | Muenster | 3,10:e,h:1,5 | Muenster |
S153 | E1 | 1–5–6-7-9-11-16 | Muenster | 3,10:e,h:1,5 | Muenster |
S154 | E1 | 1–5–6-7-10-11-16 | new code | 3,10:e,h:1,5 | Muenster |
S155 | G | 1–7–9-10-11-16 | new code | 39:f,g:e,n,z15 | N/A |
S156 | G | 1–7–9-10-11-16 | new code | 13:z:1,6 | Poona |
S162 | E4 | 1–5–6-7-11-13 | new code | 1,3,19:b:- | N/A |
S163 | B | 1–2–5-6-11-13 | new code | 4:f,g:- | Derby |
S164 | E4 | 1–5–6-7-11-13 | new code | 1,3,19:b:- | N/A |
S165 | B | 1–2–5-6-11-13 | new code | 4:f,g:- | Derby |
S167 | E4 | 1–5–6-7-11-13 | new code | 1,3,19:b:- | N/A |
S168 | B | 1–2–5-6-7-8-11-12-13-14-16 | Typhimurium | 4:i:1,2 | Typhimurium |
S169 | B | 1–2–5-6-7-10-11 | new code | 4:g,m,s:- | Hato |
S170 | B | 1–2–5-6-11-13 | new code | 4:f,g:- | Derby |
S171 | B | 1–2–5-6-10-11-13 | new code | 7:z29:- | Tennessee |
S172 | C2-C3 | 1–2–5-10-11-13-16 | new code | 8:i:z6 | Kentucky |
S183 | B | 1–2–5-6-11-13 | new code | 4:f,g:- | Derby |
S184 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
S185 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
S186 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
S187 | B | 1–2–4-5-6-11 | new code | 4:g,m,s:- | Hato |
S188 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
S191 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
S194 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
S196 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
S197 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
S198 | B | 1–2–5-6-11-13 | new code | 4:f,g:- | Derby |
S199 | B | 1–2–5-6-11-13 | new code | 4:f,g:- | Derby |
S200 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
S201 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
S202 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
S203 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
S204 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
S207 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
S208 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
S209 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
S212 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
S216 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
S219 | B | 1–2–5-6-11 | new code | 4:g,m,s:- | Hato |
S248 | B | 1–2–5-6-10-11 | new code | 4:f,g:- | Derby |
S249 | B | 1–2–5-6-10-11 | new code | 4:f,g:- | Derby |
S251 | B | 1–2–5-6-10-11-13 | new code | 4:f,g:- | Derby |
S252 | C1 | 1–2–5-11-13 | new code | 7:z29:- | Tennessee |
S253 | E4 | 1–5–6-7-11-13 | new code | 1,3,19:b:- | N/A |
S254 | B | 1–2–5-10-11-13-16 | new code | 8:i:z6 | Kentucky |
S255 | C2-C3 | 1–2–5-10-11-13-16 | new code | 4:i:1,2 | Typhimurium |