Table 3 The most abundant operational taxonomic units (OTUs) per niche: (a) supragingival plaque, (b) buccal mucosa, (c) tongue dorsum mucosa and (d) saliva
From: The canine oral microbiome: variation in bacterial populations across different niches
OTU | Assigned Taxonomy (Family/Genus/Species) | Percentage identity | Total Number of Sequence Reads | Proportion of total sequence reads (%) |
|---|---|---|---|---|
(a) Supragingival plaque | ||||
1431 | Filifactor villosus | 100.0 | 77,015 | 5.16 |
11,671 | Porphyromonas cangingivalis | 100.0 | 72,538 | 4.86 |
31,443 | unclassified Proteocatella sp. [novel 1] | 100.0 | 63,923 | 4.28 |
4989 | unclassified Bergeyella sp. [novel 1] | 100.0 | 61,339 | 4.11 |
26,919 | Peptostreptococcaceae bacterium COT-005/004 | 100.0 | 50,964 | 3.41 |
30,902 | Clostridiales bacterium FOT-072 | 100.0 | 50,429 | 3.38 |
9772 | Peptostreptococcaceae bacterium COT-047 | 100.0 | 48,193 | 3.23 |
2753 | Synergistales bacterium COT-178 | 100.0 | 45,641 | 3.06 |
12,643 | unclassified Capnocytophaga sp. [novel] | 100.0 | 43,829 | 2.94 |
28,248 | Peptostreptococcaceae bacterium COT-019 | 100.0 | 40,047 | 2.68 |
1876 | unclassified TM7/Saccharibacteria sp. [novel 3] | Â | 35,634 | 2.39 |
30,023 | TM7 phylum sp. COT-305 | 100.0 | 34,574 | 2.32 |
(b) Buccal mucosa | ||||
21,524 | unclassified Pasteurellaceae sp. [novel 1] | 100.0 | 164,340 | 12.87 |
21,526 | Conchiformibius steedae [novel 1] | 99.77 | 105,564 | 8.26 |
10,354 | Conchiformibius sp. COT-286 | 100.0 | 47,684 | 3.73 |
4989 | unclassified Bergeyella sp. [novel 1] | 100.0 | 45,849 | 3.59 |
11,671 | Porphyromonas cangingivalis | 100.0 | 37,199 | 2.91 |
9478 | Cloacibacterium sp. COT-320 | 99.76 | 36,618 | 2.87 |
31,690 | unclassified Porphyromonas sp. [novel 1] | 100.0 | 30,684 | 2.40 |
14,028 | Streptococcus sp. COT-297 | 100.0 | 30,222 | 2.37 |
12,584 | unclassified Moraxella sp. [novel] | 99.07 | 26,517 | 2.08 |
9619 | Porphyromonas canoris | 100.0 | 26,133 | 2.05 |
10,651 | Moraxella sp. FOT-350 | 100.0 | 24,867 | 1.95 |
404 | unclassified Abiotrophia sp. [novel] | 100.0 | 24,011 | 1.88 |
25,705 | Capnocytophaga sp. COT-339 | 100.0 | 18,703 | 1.47 |
1431 | Filifactor villosus | 100.0 | 18,253 | 1.43 |
(c) Tongue dorsum mucosa | ||||
10,354 | Conchiformibius sp. COT-286 | 100.0 | 86,824 | 17.27 |
15,352 | unclassified Conchiformibius sp. [novel 3] | 100.0 | 28,290 | 5.63 |
21,524 | unclassified Pasteurellaceae [novel 1] | 100.0 | 24,193 | 4.81 |
1774 | Streptococcus sp. COT-279 | 100.0 | 21,251 | 4.23 |
4989 | unclassified Frederiksenia [novel 1] | 100.0 | 18,416 | 3.66 |
25,622 | unclassified Frederiksenia [novel 1] | 100.0 | 18,370 | 3.65 |
16,272 | Conchiformibius sp. COT-289 | 100.0 | 17,915 | 3.56 |
10,651 | Moraxella sp. FOT-350 | 100.0 | 17,208 | 3.42 |
11,671 | Porphyromonas cangingivalis | 100.0 | 15,897 | 3.16 |
(d) Saliva | ||||
30,042 | unclassified Escherichia-Shigella sp. [novel 1] | 100.0 | 95,822 | 20.46 |
1382 | Streptococcus minor | 100.0 | 72,087 | 15.40 |
11,144 | unclassified Neisseria sp. [novel 1] | 100.0 | 62,356 | 13.32 |