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Table 7 Variations in transcription factors before and after nucleotide changes (− 338, − 155 and − 31) in the IL1B gene by using AliBaba2.1 software

From: First insights into the molecular basis association between promoter polymorphisms of the IL1B gene and Helicobacter pylori infection in the Sudanese population: computational approach

SNP Site Base Group TF TFBSs Sequence TF Position
−338 A GCR1 CTTCCACTTT − 343 _ -334
  GR CACTTTGTCC − 339 _ -330
T PU.1 CTTCCTCTTT − 343 _ -334
  GCR1   
−155 G Zen-1 ATTATCTCAG −164 _ -155
  GATA-1 TTATCTCAG − 163 _ -154
C C/EBPbeta ATTATCTCAC −164 _ -155
  Zen-1   
  GATA-1 TTATCTCACT −163 _ -154
−31 C
T RSRFC4 GCTATAAAAA −33 _ -24