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Table 1 The number of modules extracted from the data by the SPD algorithm

From: The identification of co-expressed gene modules in Streptococcus pneumonia from colonization to infection to predict novel potential virulence genes

Sample source

No. of all modules

No. of selected modules

No. of top modules (No. of each module’s genes)

Nasopharynx and lung

182

30

2 (13, 10)

Lung and blood

160

10

2 (7, 9)

Blood and brain

138

13

2 (3, 14)

Nasopharynx, lung, and blood

179

15

2 (5, 8)

Lung, blood, and brain

160

12

1 (3)

Nasopharynx, lung, blood, and brain

169

18

2 (4, 3)