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Table 3 Respiratory design of a facultative anaerobic P. putida KT2440. Genes encoding for hydrogenases

From: A metabolic and physiological design study of Pseudomonas putida KT2440 capable of anaerobic respiration

InterPro Entry

PFAM

Name

Abbreviation

Function

Source

IPR027394

PF14720

NiFe/NiFeSe hydrogenase

 

Reversible oxidation of molecular hydrogen

PDC

PF09459

Ethylbenzene dehydrogenase

 

Anaerobic degradation of hydrocarbons

PDC

IPR001501

PF00374

Nickel-dependent hydrogenase

 

Catalysis the reversible activation of hydrogen

PDC

IPR001109

PF01455

HupF/HypC family

HupF/HypC

[NiFe]-hydrogenase and other nickel metalloenzymes synthesis

PDC

IPR000671

PF01750

Hydrogenase maturation protease

 

Hydrogenase maturation

PDC

IPR002780

PF01924

Hydrogenase formation

HypA

Hydrogenase formation

PDC

IPR006894

PF04809

Hydrogenase expression protein

HupH

Hydrogenase synthesis, C-terminal domain

PDC

IPR010893

PF07449

Hydrogenase-1 expression protein

HyaE

Hydrogenase assembly

PDC

IPR023994

PF11939

Chaperone for [NiFe]-hydrogenase assembly

HybE

[NiFe] hydrogenases assembly chaperone

PDC

PF13237

4Fe-4S dicluster domain

 

Mediate electron transfer

PDC

IPR000688

PF01155

Metallochaperone

hypA

[Ni,Fe]-hydrogenase and urease chaperone

PDC

IPR007038

PF04955

HupE / UreJ protein

HupE / UreJ

Hydrogenase / urease accessory proteins

PDC

  1. T Trancriptomics, PDC Protein Domain Comparisons, GSM Genome Scale Modelling [30, 31];