Method | # Unique protein domains |
---|---|
Genome domain comparisons | |
 Input aerobic domain core | 1029 |
 Input anaerobic domain core | 1182 |
Long list, 1628 strains [95% threshold] | |
 Shared domain core | 755 |
 Aerobic specific domain core | 274 |
 Anaerobic specific domain core | 427 |
Long list, 1628 strains [1% threshold] | |
 Shared domain core | 1015 |
 Aerobic specific domain core | 14 |
 Anaerobic specific domain core | 167 |
Restricted list, 225 strains [90% threshold] | |
 Shared domain core | 1012 |
 Aerobic specific domain core | 17 |
 Anaerobic specific domain core | 170 |
Restricted list, 225 strains [1% threshold] | |
 Shared domain core | 934 |
 Aerobic specific domain core | 95 |
 Anaerobic specific domain core | 248 |
Transcriptome analysis | 175 |
GSM simulations | 18 |
RandomForest [input] | 5831 |
 Domains with a cumulative Gini coefficient ≥ 20 | 360 |
 Domains with a cumulative Gini coefficient ≥ 100 | 5 |