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Table 2 S. pneumoniae clonal characterization by MinION

From: Rapid identification, capsular typing and molecular characterization of Streptococcus pneumoniae by using whole genome nanopore sequencing

Sequence type or clonal complex designation

% of S. pneumoniae strains corresponding to each designation

ST

16% (5/32)

SLV

56% (18/32)

DLV

25% (8/32)

QLV

3% (1/32)

  1. To obtain the % of S. pneumoniae strains corresponding to each designation, MinION results were compared to those obtained by Sanger sequencing. A total of 32 invasive pneumococcal strains were analyzed. Wg-MLST results were achieved in 3 h
  2. Abbreviations: ST Sequence Type, SLV Single Locus Variantm, DLV, Double Locus Variant, QLV Quadruple Locus Variant
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BMC Microbiology

ISSN: 1471-2180

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