S. enterica | Impact of infection on gut microbiota | Method for Analyses of Gut Microbiota | Reference |
---|---|---|---|
S. Typhimurium infected pig | Increase in Anaerobacter, Barnesiella, Pediococcus, Sporacetigenium, Turicibacter, Catenibacterium, Prevotella, Pseudobutyrivibrio, and Xylanibacter | Roche 454 GS-FLX sequencer | [74] |
S. Typhimurium infected pig | Increase Citrobacter but decrease Bifidobacterium, Lactobacillus, Clostridium spp., and Ruminococcus | Illumina MiSeq sequencer | [75] |
S. Typhimurium-infected mice | Increase Enterobacteriaceae members, such as Enterobacter cancerogenus, Proteus penneri, and Escherichia fergusonii | Illumina MiSeq sequencer | [77] |
S. Typhimurium-infected mice | Decrease Lactobacillus spp., Enterococcus spp., Eubacterium rectale, and Clostridium coccoides | Quantitative real-time PCR amplification | [78] |
S. Enteritidis infected chicken | Increase Anaerotruncus, Bacillus, Enterococcus, Anaerostipes, Flavonifractor and Intestinimonas but decrease Blautia, Shuttleworthia, and Anaerostipes | Illumina MiSeq sequencer | [79] |
S. Enteritidis infected young chicken | Increase Enterobacteriaceae members but decrease Lachnospiraceae family | Illumina MiSeq sequencer | [80] |
S. Enteritidis infected chicken | Increase Enterobacteriaceae family but decrease Ruminococcaceae members | Pyrosequencing 454 sequencer | [81] |
S. Enteritidis infected chicken | Increase Enterobacteriales bacteria but decrease Clostridiales, Lactobacillales, and Bifidobacteriales | Quantitative real-time PCR amplification | [82] |