Current knowledge and perspectives of potential impacts of Salmonella enterica on the profile of the gut microbiota

Table 1 Summary of the effect of S. enterica on the gut microbiota composition

S. enterica	Impact of infection on gut microbiota	Method for Analyses of Gut Microbiota	Reference
S. Typhimurium infected pig	Increase in Anaerobacter, Barnesiella, Pediococcus, Sporacetigenium, Turicibacter, Catenibacterium, Prevotella, Pseudobutyrivibrio, and Xylanibacter	Roche 454 GS-FLX sequencer	[74]
S. Typhimurium infected pig	Increase Citrobacter but decrease Bifidobacterium, Lactobacillus, Clostridium spp., and Ruminococcus	Illumina MiSeq sequencer	[75]
S. Typhimurium-infected mice	Increase Enterobacteriaceae members, such as Enterobacter cancerogenus, Proteus penneri, and Escherichia fergusonii	Illumina MiSeq sequencer	[77]
S. Typhimurium-infected mice	Decrease Lactobacillus spp., Enterococcus spp., Eubacterium rectale, and Clostridium coccoides	Quantitative real-time PCR amplification	[78]
S. Enteritidis infected chicken	Increase Anaerotruncus, Bacillus, Enterococcus, Anaerostipes, Flavonifractor and Intestinimonas but decrease Blautia, Shuttleworthia, and Anaerostipes	Illumina MiSeq sequencer	[79]
S. Enteritidis infected young chicken	Increase Enterobacteriaceae members but decrease Lachnospiraceae family	Illumina MiSeq sequencer	[80]
S. Enteritidis infected chicken	Increase Enterobacteriaceae family but decrease Ruminococcaceae members	Pyrosequencing 454 sequencer	[81]
S. Enteritidis infected chicken	Increase Enterobacteriales bacteria but decrease Clostridiales, Lactobacillales, and Bifidobacteriales	Quantitative real-time PCR amplification	[82]

ISSN: 1471-2180