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Table 1 Summary of the effect of S. enterica on the gut microbiota composition

From: Current knowledge and perspectives of potential impacts of Salmonella enterica on the profile of the gut microbiota

S. enterica Impact of infection on gut microbiota Method for Analyses of Gut Microbiota Reference
S. Typhimurium infected pig Increase in Anaerobacter, Barnesiella, Pediococcus, Sporacetigenium, Turicibacter, Catenibacterium, Prevotella, Pseudobutyrivibrio, and Xylanibacter Roche 454 GS-FLX sequencer [74]
S. Typhimurium infected pig Increase Citrobacter but decrease Bifidobacterium, Lactobacillus, Clostridium spp., and Ruminococcus Illumina MiSeq sequencer [75]
S. Typhimurium-infected mice Increase Enterobacteriaceae members, such as Enterobacter cancerogenus, Proteus penneri, and Escherichia fergusonii Illumina MiSeq sequencer [77]
S. Typhimurium-infected mice Decrease Lactobacillus spp., Enterococcus spp., Eubacterium rectale, and Clostridium coccoides Quantitative real-time PCR amplification [78]
S. Enteritidis infected chicken Increase Anaerotruncus, Bacillus, Enterococcus, Anaerostipes, Flavonifractor and Intestinimonas but decrease Blautia, Shuttleworthia, and Anaerostipes Illumina MiSeq sequencer [79]
S. Enteritidis infected young chicken Increase Enterobacteriaceae members but decrease Lachnospiraceae family Illumina MiSeq sequencer [80]
S. Enteritidis infected chicken Increase Enterobacteriaceae family but decrease Ruminococcaceae members Pyrosequencing 454 sequencer [81]
S. Enteritidis infected chicken Increase Enterobacteriales bacteria but decrease Clostridiales, Lactobacillales, and Bifidobacteriales Quantitative real-time PCR amplification [82]