Table 2 The distribution of dominant OTUs identified during Peri-implantitis development and the 16S rRNA gene fragments of their closest isolates and uncultured bacteria
From: Oral microbial profile variation during canine ligature-induced peri-implantitis development
| Â | Closest isolates | Identity | Closest uncultured (nr/nt) | Identity | Phase T0 | Phase T1 | Phase T2 | Phase T3 |
|---|---|---|---|---|---|---|---|---|
OTU_1 | Peptostreptococcus canis (NR_117641.1) | 99.50% | Uncultured bacterium (JQ192915.1) | 100% | 43.46% | 5.48% | 10.50% | 10.89% |
OTU_3 | Porphyromonas macacae (NR_025908.1) | 97.88% | Uncultured bacterium (KX437329.1) | 100% | 0.19% | 6.29% | 0.95% | 10.98% |
OTU_7 | Porphyromonas endodontalis (NR_113085.1) | 94.37% | Uncultured Porphyromonas sp. canine oral (JN713348.1) | 99.30% | 0.12% | 0.48% | 5.43% | 6.71% |
OTU_13 | Fretibacterium fastidiosum (NR_108538.1) | 95.82% | Uncultured Fretibacterium sp. Feline (KM462182.1) | 100% | 0.58% | 3.05% | 3.99% | 4.66% |
OTU_5 | Bacteroides pyogenes (NR_113048.1) | 100% | Uncultured Bacteroides (MH755473.1) | 100% | 3.49% | 0.61% | 2.32% | 5.30% |
OTU_9 | Fusobacterium simiae (NR_113318.1) | 99.51 | Uncultured Fusobacterium sp. canine (JN713401.1) | 100% | 0.07% | 8.22% | 0.79% | 2.07% |
OTU_8 | Porphyromonas gulae (NR_113088.1) | 99.53% | Uncultured bacterium (HM328336.1) | 99.76% | 0.29% | 6.92% | 2.65% | 0.88% |
OTU_4 | Methanobrevibacter oralis (LN898260.1) | 100% | Uncultured Methanobrevibacter (JN052095.1) | 100% | 0.23% | 0.09% | 5.68% | 4.53% |
OTU_2 | Methanimicrococcus blatticola (JQ268014.1) | 98.97% | Uncultured Methanimicrococcus (LT624863.1) | 97.42% | 0.24% | 0.09% | 8.23% | 1.55% |
OTU_19 | Treponema denticola (NR_074582.1) | 97.91% | Uncutlured Treponema (JN713361.1) | 100% | 0.09% | 3.37% | 0.79% | 4.89% |
OTU_10 | Porphyromonas cangingivalis (NR_113080.1) | 100% | Uncultured bacterium (JF241087.1) | 100% | 0.85% | 6.38% | 1.72% | 0.10% |
OTU_6 | Intestinimonas butyriciproduens (NR_118554.1) | 94.1% | Uncultured Clostridiales bacterium (JN713380.1) | 99.75% | 0.40% | 0.17% | 5.41% | 2.56% |
OTU_14 | Treponema sp. PT8 (AM980447.1) | 100% | Uncultured Treponema sp. (GQ424168.1) | 99.77% | 0.05% | 2.75% | 0.06% | 4.36% |
OTU_37 | Odoribacter denticanis strain (NR_042977.1) | 99.76% | Odoribacter denticanis canine oral (JN713247.1) | 99.76% | 0.83% | 1.28% | 2.29% | 1.79% |
OTU_16 | Olivibacter sitiensis (NR_043805.1) | 84.15% | Uncultured Bacteroidia bacterium (KM462114.1) | 100% | 0.07% | 0.04% | 3.87% | 1.81% |
OTU_17 | Staphylococcus intermedius NCTC 11048 (NR_113351.1) | 100% | Uncultured Staphylococcus sp. strain (JX482520.1) | 100% | 4.94% | 0.02% | 0.02% | 0.07% |
OTU_15 | Metaprevotella massiliensis (NR_147377.1) | 90.59% | Prevotella sp. canine oral taxon (JN713360.1) | 100% | 0.09% | 0.45% | 3.52% | 0.91% |
OTU_11 | Porphyromonas crevioricanis (NR_104834.1) | 100% | Uncultured bacterium (JF17468.1) | 100% | 0.04% | 2.47% | 1.24% | 1.16% |
OTU_47 | Schaalia canis (NR_025366.1) | 98.34% | Uncultured bacterium (JF223833.1) | 100% | 3.76% | 0.51% | 0.35% | 0.02% |
OTU_26 | Intestinimonas butyriciproducens (NR_118554.1) | 94.84% | Uncultured Ruminococcaceae bacterium (MH572181.1) | 100% | 0.08% | 0.94% | 1.66% | 1.77% |
OTU_12 | Labilibacter aurantiacus (NR_156071.1) | 85.31% | Uncultured bacterium (KJ874155.1) | 92.47% | 0.12% | 1.71% | 1.40% | 1.10% |
OTU_30 | Filifactor villosus (NR_041928.1) | 99.01% | Filifactor sp. Feline (KM462053.1) | 100% | 0.19% | 2.17% | 1.09% | 0.59% |