Response of the gut microbiota during the Clostridioides difficile infection in tree shrews mimics those in humans

Table 2 Differential taxa abundance between TSCDA and TSCDI group in this study

	Taxa	Abundance after C. difficile infection	P value
Phylum	Proteobacteria	Increase	0.002
	Fusobacteria	Decrease	0.001
	Bacteroidetes	Decrease	0.004
	Epsilonbacteraeota	Decrease	0.002
Class	Clostridia	Increase	0.001
	Gammaproteobacteria	Increase	0.000
	Fusobacteriia	Decrease	0.001
	Bacteroidia	Decrease	0.002
	Campylobacteria	Decrease	0.002
Order	Clostridiales	Increase	0.001
	Enterobacteriales	Increase	0.001
	Fusobacteriales	Decrease	0.001
	Bacteroidales	Decrease	0.003
	Campylobacterales	Decrease	0.002
Family	Lachnospiraceae	Increase	0.019
	Enterobacteriaceae	Increase	0.001
	Clostridiaceae	Increase	0.000
	Fusobacteriaceae	Decrease	0.001
	Bacteroidaceae	Decrease	0.004
	Helicobacteraceae	Decrease	0.003
Genus	Escherichia	Increase	0.001
	Clostridium	Increase	8.77E-05
	Fusobacterium	Decrease	0.001
	Bacteroides	Increase	0.004
	Blautia	Increase	0.028
	Tyzzerella	Increase	0.005
	Helicobacter	Decrease	0.003

ISSN: 1471-2180