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Fig. 3 | BMC Microbiology

Fig. 3

From: Whole genome sequencing of macrolide resistant Streptococcus pneumoniae serotype 19A sequence type 416

Fig. 3

Relatedness between sequences of particular genes involved in serotype switch and the corresponding genes in references. Genome diagram compiled from assemblies with three reference sequences: region between start of pbp1a and end of dexB in Netherlands15B-37 (coloured in dark brown), 19A cps locus (coloured in light brown) and region between start of aliA and end of pbp1a (coloured in light brown). Genes with sequences identical between particular strain and corresponding gene in the genome of Netherlands15B-37 are coloured in dark brown, those identical to the sequences from cps locus in brown. (SP0310, SPAR147_310; SP0340, SPAR147_0340) Genes with sequences different to reference and to all samples in the collection are shown in orange. Genes with sequences differing to reference in one SNP same in > 1 sample are coloured in green, those differing in the same SNPs > 1 sample are represented in shades of blue, genes which were not found in particular genome are grey. Isolates are ordered and labelled likewise in Fig. 1

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