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Table 3 NCK2608 (Δlba1539) differentially expressed genes in stationary growth phase

From: S-layer associated proteins contribute to the adhesive and immunomodulatory properties of Lactobacillus acidophilus NCFM

Locus ID Name Ratio COG*
 LBA0833 ftsW −1.06 D
 LBA1883 NLP-P60 secreted protein −2.00 M
 LBA1140 lysin −1.58 M
 LBA0520 galactosyltransferase −1.48 M
 LBA1743 cell wall-associated hydrolase −1.16 M
 LBA1744 glycosidase −1.13 M
 LBA1736 epsB −1.09 M
 LBA0165 pepO −1.40 O
 LBA1901 thioredoxin −1.38 O
 LBA1208 msrA −1.25 O
 LBA1107 glutathione reductase −1.13 O
 LBA0096 htpX −1.12 O
 LBA1659 response regulator −1.63 T
 LBA0544 transcriptional regulator −1.45 T
 LBA1132 ABC transporter component −1.18 V
 LBA0560 ABC transporter component −1.07 V
 LBA1680 ABC transporter component −1.01 V
 LBA1519 pheS −1.03 J
 LBA1899 transcriptional regulator −1.44 K
 LBA0835 hypothetical protein −1.29 L
 LBA0797 radC −1.04 L
 LBA0545 hypothetical protein −1.00 L
 LBA1109 hypothetical protein −1.47 C
 LBA1220 pyridine mercuric reductase −1.45 C
 LBA0538 Na + −H + -exchanging protein −1.09 C
 LBA1896 asnA −1.54 E
 LBA1961 oppA −1.28 E
 LBA1177 iron-sulfur cofactor synthesis −1.26 E
 LBA1045 ABC transporter component −1.15 E
 LBA1292 aa transporter −1.14 E
 LBA1658 prolyl aminopeptidase −1.04 E
 LBA0240 xanthine phosphoribosyltransferase −1.40 F
 LBA0041 rtpR −1.35 F
 LBA1631 deoxyribosyltransferase −1.24 F
 LBA0591 iunH −1.18 F
 LBA0131 ribose-p pyrokinase −1.06 F
 LBA0836 coaD −1.05 H
 LBA0542 heavy-metal-transporting ATPase −1.87 P
 LBA1771 ABC transporter component −1.69 P
 LBA0541 cadA −1.47 P
 LBA0200 oppB −1.06 P
 LBA0019 hypothetical protein −2.87 S
 LBA0543 hypothetical protein −1.66 S
 LBA0493 aggregation promoting protein −1.62 S
 LBA0834 hypothetical protein −1.57 S
 LBA1769 hypothetical protein −1.52 S
 LBA1943 lipoprotein −1.40 S
 LBA1850 lysM −1.23 S
 LBA0387 hypothetical protein −1.18 S
 LBA0208 hypothetical protein −1.14 S
 LBA1010 hypothetical protein −1.03 S
 LBA1738 hflX −1.01 S
 LBA0018 membrane protein −1.83 None
 LBA1108 hypothetical protein −1.59 None
 LBA0017 general stress response −1.32 None
 LBA1221 hypothetical protein −1.29 None
 LBA0616 hypothetical protein 1.01 M
 LBA0724 licT 1.37 K
 LBA1410 lysR 1.18 K
 LBA1443 msm operon regulator 1.06 K
 LBA0563 pyrR 1.14 F
 LBA1558 purS 1.11 F
 LBA0644 hypothetical protein 1.06 Q
 LBA0402 hypothetical protein 1.02 None
 LBA1889 hypothetical protein 1.05 None
  1. *Clusters of Orthologous Groups (COG) were assigned to significant genes using the EggNOG Database. The categories are as follows: C, Energy production and conversion; E, amino acid transport and metabolism; F, nucleotide transport and metabolism; G, carbohydrate transport and metabolism; H, coenzyme transport and metabolism; I, lipid transport and metabolism; J, translation, ribosomal structure and biogenesis; K, transcription; L, replication, recombination and repair; M, cell wall/membrane/envelope biogenesis; O, post-translational modification, protein turnover, and chaperones; P, inorganic ion transport and metabolism; Q, secondary metabolites biosynthesis, transport, and catabolism; R, general function prediction only; S, function unknown; T, signal transduction mechanisms; V, defense mechanisms