Genome sequence and spore germination-associated transcriptome analysis of Corynespora cassiicola from cucumber

BMC Microbiology

Table 2 Genome-wide analysis for C. cassiicola HGCC, CCP and UM591 gene sets

Characteristics	HGCC	CCP	UM591	core^a	HG-CCP-UM591 core^b	HG-CCP-UM591 specific^c	HG specific^d	CCP specific^e	UM591 specific^f	HGCC PHI
Protein-encoding gene	14,631	14,560	14,744	10,758	12,986	2228	118	100	133	4232
Secreted protein	1049	1076	1106	816	1003	187	3	1	7	358
PHI	4232	4298	4214	3484	4208	724	3	0	0	–
Protease	612	625	621	509	614	105	0	0	0	258
Glycoside hydrolase	262	262	265	223	262	39	0	0	0	141
Lipase	21	23	20	17	21	4	0	1	0	9
Glucanase	30	33	32	29	29	0	0	0	0	24
Glucosidase	13	13	16	10	10	0	0	0	0	13
Xylanase	7	9	9	6	6	0	0	0	0	4
Pectate lyase	34	33	33	28	34	6	0	0	0	30
Cutinase	8	8	9	7	8	1	0	0	0	5
Cellulase	14	17	16	14	14	0	0	0	0	5
Pectinesterase	4	4	5	4	4	0	0	0	0	4
MFS transporter	238	246	240	196	238	42	0	0	0	230
ABC transporter	51	50	48	41	51	10	0	0	0	51
P450	218	214	209	177	218	41	0	0	0	198
Protein kinase	154	156	151	127	154	27	0	0	0	150
Histidine kinase	11	12	11	9	11	2	0	0	0	11
GPCR	157	159	173	133	157	24	0	0	0	96
Pth11-like GPCR	62	61	57	50	62	12	0	0	0	53
CFEM-containing protein	18	19	19	19	20	1	0	0	0	12
Fungal specific transcription factor	202	217	212	162	202	40	0	0	1	187
Backbone gene for secondary metabolism	52	51	49	49	49	0	3	3	0	50

^a core: C. cassiicola HGCC, CCP and UM591 and 10 other phytopathogenic ascomycetes genes grouped by reciprocal BLAST analysis with a cutoff E-value of 1e-5; ^b HGCC-CCP-UM591 core: HGCC genes present in both CCP and UM591grouped by reciprocal BLAST analysis with a cutoff E-value of 1e-5; ^c HGCC-CCP-UM591 specific: HGCC genes present in both CCP and UM591 but specific compared to 10 other fungi grouped by reciprocal BLAST analysis with a cutoff E-value of 1e-5; ^d HG specific: specific genes of HGCC against CCP, UM591, and 10 other fungi; ^e CCP specific: specific genes of CCP against HGCC, UM591, and 10 other fungi; ^f UM591 specific: specific genes of UM591 against HGCC, CCP, and 10 other fungi

ISSN: 1471-2180