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Table 4 Oligonucleotide primer pairs and protocol used for optimized species-specific real-time qPCR-based assays

From: Real-time quantitative PCR assay development and application for assessment of agricultural surface water and various fecal matter for prevalence of Aliarcobacter faecis and Aliarcobacter lanthieri

Species

Target Gene

Sequence

5ˊ-3ˊ

Anealing Temp (°C)

Product Size (bp)

Melting Peak (°C)

Reference

A. faecis

rpoB

Afae-F: GCT CCA GGA AGT ACA AAA GTA G

Afae-R: AGG CTA GCA GCT ACT CCC

58.0

152

79

Khan et al. 2017 [15]

A. lanthieri

gyrA

Alan-F: CTT GGT GAA TTG CTT GAT GCA A

Alan-R: CCA TTA AAT CAC TAG CTT CTG CT

55.0

72

74

This study