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Table 1 List of reference strains of target and other bacterial species and strains used in this study

From: Real-time quantitative PCR assay development and application for assessment of agricultural surface water and various fecal matter for prevalence of Aliarcobacter faecis and Aliarcobacter lanthieri

Sr. #SpeciesSourceStrain ID
1Haloarcobacter (Arcobacter) bivalviorumShellfishLMG 26154
2Aliarcobacter (Arcobacter) butzleriHuman diarrheic stoolATCC 49616
3A. cryaerophilusBovine aborted fetusNCTC 11885
4A. lanthieriPig manureLMG 28516
5A. faecisHuman wasteLMG 28519
6A. skirrowiiLamb fecesATCC 51322
7A. thereiusOrgans of aborted porcineLMG 24486
8A. trophiarumFeces of fattening pigsLMG 25534
9A. cibariusBroiler carcassesLMG 21996
10Pseudoarcobacter (Arcobacter) defluviiSewageLMG 25694
11P. ellisiiMusselsLMG 26115
12P. venerupisShellfishLMG 26156
13Malacobacter (Arcobacter) halophilusHypersaline lagoonATCC BAA-1022
14M. marinusMix seawater, starfish and seaweedLMG 25770
15M. molluscorumMussels and oystersLMG 25693
16M. mytiliMusselsLMG 24559
17Arcobacter nitrofigilisRootsATCC 33309
18Aeromonas allosaccharophilaDiseased elversATCC 51208
19A. bestiarumInfected fishATCC 51108
20A. caviaeEpizootic of young guinea pigsATCC 15468
21A. hydrophilaDitch waterATCC 13444
22A. jandaeiHuman fecesATCC 49568
23A. mediaMarine fishCDC 0435–84
24A. popoffiDrinking water production plantBAA-243
25A. salmonicidaFreshwaterCDC 0434–84
26A. schubertiiSkinATCC 43700
27A. sobriaSludgeATCC 35994
28A. trotaHuman fecesATCC 49658
29A. veroniiRed-leg frogATCC 9071
30A. bv. veroniiAmputation WoundATCC 35625
31Campylobacter jejuniHuman fecesATCC 33291
32C. jejuniHuman fecesATCC 29428
33C. jejuniHuman fecesATCC 33291
34C. jejuniHuman fecesATCC 33292
35C. jejuni subsp. doyleiHuman fecesATCC 49349
36C. coliSwineATCC 43136
37C. coliATCC 49941
38C. coliMarmoset fecesATCC 43478
39C. lariHuman fecesATCC 43675
40C. helveticusCatATCC 51210
41C. fetus subsp. fetusBloodATCC 15296
42C. hyointestinalisIntestine of swineATCC 35217
43C. lanienaeCCUG 44467
44C. upsaliensisDog fecesATCC 43954
45Escherichia coli O157:H7Environmental isolate
46E. coliCanineATCC 35218
47Enterococcus aviumClinical isolateATCC 49464
48E. casseliflavusATCC 700327
49E. duransHuman fecesATCC 6056
50E. faecalisMeatATCC 7080
51E. faeciumHuman fecesATCC 6569
52E. gallinarumChicken intestinesATCC 49573
53E. hiraeATCC 8043
54E. saccharolyticusStraw beddingATCC 43076
55Pseudomonas shigelloidesEnvironmental isolate
56Salmonella enterica subsp. arizonaeATC C 13314
57S. enterica subsp. diarizonaeATCC 12325
58S. enterica subsp. houtenaeATCC 29932
59Helicobacter pyloriHuman gastric antrumNCTC 11637
60H. typhloniusHuman caecumCCUG 48335
61H. ganmaniIntestines of miceCCUG 43526
62H. marmotaeWoodchuck liverCCUG 52419
63H. cetorumBaluga whale fecesATCC BAA-429
64Klebsiella pneumoniaeHuman serotype 3ATCC 13883
65Staphylococcus aureusClinical isolateATCC 25923
66S. epidermidisClinical isolateATCC 12228
67Streptococcus pyogenesClinical isolateATCC 19615