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Table 1 Overview of antibiotic resistance genes, virulence genes, biocide/metal resistance genes and conjugal transfer genes detected in Escherichia coli strains 631 (GenBank accession number: CP040263-CP040268) and 1500 (GenBank accession number: CP040269-CP040271) complete genome sequences

From: Nanopore sequencing reveals genomic map of CTX-M-type extended-spectrum β-lactamases carried by Escherichia coli strains isolated from blue mussels (Mytilus edulis) in Norway

Strain Contig Size (bp) Plasmid type Antibiotic resistance genes Virulence genesα Biocide/metal resistance genesβ Conjugal transfer genesγ
631 Chromosome 5,191,486 aac(3)-IId, aadA5, aph(3″)-Ib, aph(6)-Id, blaCTX-M-14, blaTEM-1, catA1, dfrA17, mph(A), mrx, qacEΔ1, sul1, sul2, tet(D), tmrB ecpA-E, ecpR, elfA/G, elfC-D, eaeH, hcpA-C, papX, fimA-I, cah, ehaB, air/eaeX, upaG/ehaG, upaH, ibeB-C, tia, chuA, chuS-U, chuW-Y, sitA-D, fyuA, irp1–2, ybtA/E/X, ybtP-Q, ybtS-U, espL1/L4/R1/X1, espX4–5, espY1–4, ACE T6SS-like gene, aec11, aec15–19, aec22–32, two SCI-I T6SS-like genes, hlyE/clyA acrA-B, arsB-C, arsR, asr, baeR-S, bcr, chrA copA, corA-D, cpxA/R, cueO, cusB/S, cutA/C, dsbA-C, emrA-B, emrD/K/R/Y, nikA-E, nikR, sodA-B, soxR-S, modA-C, modE, evgA/S, gadA-B, gadX, ibpA-B, marA/R, pstA-C, pstS, tehA-B, ybtP-Q, ydeI, ydeO-P, fabI, glpF, iclR, mgtA, mntR, nfsA, oxyRkp, phoB, pitA, robA, rpoS, sugE, tolC, ychH, ygiW, yhcN, yieF, yodD, yqjH, acrD/yffA, acrE/envC, acrF/envD, actP/yjcG, bhsA/ycfR/comC, comR/ycfQ, cueR/ybbI, cusA/ybdE, cusC/ylcB, cusF/cusX, cusR/ylcA, cutE/lnt, cutF/nlpE, emrE/mvrC, fetA/ybbL, fetB/ybbM, fieF/yiip, gadC/xasA, gadE/yhiE, gadW/yhiW, hdeA/yhiB, hdeB/yhiC, mdfA/cmr, mdtA/yegM, mdtB/yegN, mdtC/yegO, mdtE/yhiU, mdtF/yhiV, mdtG/yceE, mdtI/ydgE, mdtJ/ebrB/ydgF, mdtK/ydhE, mdtN/yjcR, mntH/yfeP, mntP/yebN, ostA/lptD, rcnA/yohM, rcnB/yohN, rcnR/yohL, ymgB/ariR, zinT/yodA, zitB/ybgR, zntA/yhhO, zntR/yhdM, znuA/yebL, znuB/yebI, znuC/yebM, zraR/hydH, zraS/hydG, zupT/ygiE, zur/yjbK None
Plasmid pEc631_1 97,726 IncB/O/K/Z None espI None traX, traV, traT, traS, traR, traQ, traO, traN, traM, traJ, traF, traE, traC, trbC, trbA, traW, traP
Plasmid pEc631_2 73,952 IncFII None None None traM, traY, traA, traL, traE, traK, traB, traP, traV, traR, traC, traW, traU, traN, traF, traQ, traH, traG, traT, traD, traI, traX, trbB, trbC, trbE, trbF, trbI, trbJ
Plasmid pEc631_3 30,240 IncFII family None None None trbM, trbG, trbI
Plasmid pEc631_4 7464 Col156 None None None None
Plasmid pEc631_5 5165 Col156 None None None None
1500 Chromosome 4,736,377 None cfaA-E, ecpA-E, ecpR, elfA/G, elfC-D, eaeH, hcpA-C, fimA-I, ehaB, air/eaeX, upaG/ehaG, ibeB-C, sitA-D, espL1/L4/R1/X1, espX4–5, ACE T6SS-like gene, aec15–18, aec22–32, hlyE/clyA cpxA/R, corA-D, nikA-E, nikR, cusB/F/S/X, soxR-S, emrA-B, emrD/K/R/Y, gadA-B, gadX, cutA/C, ars, arsC-B, arsR, dsbA-C, copA, tehA-B, modA-C, modE, ibpA-B, sodA/B, pstA-C, ptsS, marA/R, acrA/B, baeR/S, evgA/S, ydeO-P, bcr, cueO, fabI, glpF, iclR, mgtA, mntR, nfsA, oxyRkp, phoB, pitA, robA, rpoS, sugE, tolC, ychH, ydeI, ygiW, yhcN, yieF, yodD, ygjH, acrD/yffA, acrE/envC, acrF/envD, acrR/YbaH, actP/yjcG, bhsA/ycfR/comC, comR/ycfQ, cueR/ybbI, cusA/ybdE, cusC/ylcB, cusR/ylcA, cutE/Int, cutF/nlpE, emrE/mvrC, fetA/ybbL, fetB/ybbM, fieF/yiip, gadC/xasA, gadE/yhiE, gadW/yhiW, hdeA/yhiB, hdeB/yhiC, mdfA/cmr, mdtA/yegM, mdtB/yegN, mdtC/yegO, mdtE/yhiU, mdtF/yhiV, mdtG/yceE, mdtI/ydgE, mdtJ/ebrB/ydgF, mdtK/ydhE, mdtM/yjiO, mdtN/yjcR, mntH/yfeP, mntP/yebN, ostA/lptD, rcnA/yohM, rcnB/yohN, rcnR/yohL, ymgB/ariR, zinT/yodA, zitB/ybgR, zntA/yhhO, zntR/yhdM, znuA/yebL, znuB/yebI, znuC/yebM, zraR/hydH, zupT/ygiE, zur/yjbK None
Plasmid pEc1500_CTX 91,123 IncI1 blaCTX-M-15, blaTEM-1 None None traX, traV, traT, traS, traR, traQ, traP, traO, traN, traM, traJ, traE, traC, traA, traA, trbC, trbA, traW, traI
Plasmid pEc1500_2 4087 Col8282 None None None None
  1. α,βDetails about the virulence genes and biocide/metal resistance genes are provided in Additional file 3, γDetails about the conjugal transfer genes are provided in Additional file 4