Table 1 Overview of antibiotic resistance genes, virulence genes, biocide/metal resistance genes and conjugal transfer genes detected in Escherichia coli strains 631 (GenBank accession number: CP040263-CP040268) and 1500 (GenBank accession number: CP040269-CP040271) complete genome sequences
Strain | Contig | Size (bp) | Plasmid type | Antibiotic resistance genes | Virulence genesα | Biocide/metal resistance genesβ | Conjugal transfer genesγ |
|---|---|---|---|---|---|---|---|
631 | Chromosome | 5,191,486 | – | aac(3)-IId, aadA5, aph(3″)-Ib, aph(6)-Id, blaCTX-M-14, blaTEM-1, catA1, dfrA17, mph(A), mrx, qacEΔ1, sul1, sul2, tet(D), tmrB | ecpA-E, ecpR, elfA/G, elfC-D, eaeH, hcpA-C, papX, fimA-I, cah, ehaB, air/eaeX, upaG/ehaG, upaH, ibeB-C, tia, chuA, chuS-U, chuW-Y, sitA-D, fyuA, irp1–2, ybtA/E/X, ybtP-Q, ybtS-U, espL1/L4/R1/X1, espX4–5, espY1–4, ACE T6SS-like gene, aec11, aec15–19, aec22–32, two SCI-I T6SS-like genes, hlyE/clyA | acrA-B, arsB-C, arsR, asr, baeR-S, bcr, chrA copA, corA-D, cpxA/R, cueO, cusB/S, cutA/C, dsbA-C, emrA-B, emrD/K/R/Y, nikA-E, nikR, sodA-B, soxR-S, modA-C, modE, evgA/S, gadA-B, gadX, ibpA-B, marA/R, pstA-C, pstS, tehA-B, ybtP-Q, ydeI, ydeO-P, fabI, glpF, iclR, mgtA, mntR, nfsA, oxyRkp, phoB, pitA, robA, rpoS, sugE, tolC, ychH, ygiW, yhcN, yieF, yodD, yqjH, acrD/yffA, acrE/envC, acrF/envD, actP/yjcG, bhsA/ycfR/comC, comR/ycfQ, cueR/ybbI, cusA/ybdE, cusC/ylcB, cusF/cusX, cusR/ylcA, cutE/lnt, cutF/nlpE, emrE/mvrC, fetA/ybbL, fetB/ybbM, fieF/yiip, gadC/xasA, gadE/yhiE, gadW/yhiW, hdeA/yhiB, hdeB/yhiC, mdfA/cmr, mdtA/yegM, mdtB/yegN, mdtC/yegO, mdtE/yhiU, mdtF/yhiV, mdtG/yceE, mdtI/ydgE, mdtJ/ebrB/ydgF, mdtK/ydhE, mdtN/yjcR, mntH/yfeP, mntP/yebN, ostA/lptD, rcnA/yohM, rcnB/yohN, rcnR/yohL, ymgB/ariR, zinT/yodA, zitB/ybgR, zntA/yhhO, zntR/yhdM, znuA/yebL, znuB/yebI, znuC/yebM, zraR/hydH, zraS/hydG, zupT/ygiE, zur/yjbK | None |
Plasmid pEc631_1 | 97,726 | IncB/O/K/Z | None | espI | None | traX, traV, traT, traS, traR, traQ, traO, traN, traM, traJ, traF, traE, traC, trbC, trbA, traW, traP | |
Plasmid pEc631_2 | 73,952 | IncFII | None | None | None | traM, traY, traA, traL, traE, traK, traB, traP, traV, traR, traC, traW, traU, traN, traF, traQ, traH, traG, traT, traD, traI, traX, trbB, trbC, trbE, trbF, trbI, trbJ | |
Plasmid pEc631_3 | 30,240 | IncFII family | None | None | None | trbM, trbG, trbI | |
Plasmid pEc631_4 | 7464 | Col156 | None | None | None | None | |
Plasmid pEc631_5 | 5165 | Col156 | None | None | None | None | |
1500 | Chromosome | 4,736,377 | – | None | cfaA-E, ecpA-E, ecpR, elfA/G, elfC-D, eaeH, hcpA-C, fimA-I, ehaB, air/eaeX, upaG/ehaG, ibeB-C, sitA-D, espL1/L4/R1/X1, espX4–5, ACE T6SS-like gene, aec15–18, aec22–32, hlyE/clyA | cpxA/R, corA-D, nikA-E, nikR, cusB/F/S/X, soxR-S, emrA-B, emrD/K/R/Y, gadA-B, gadX, cutA/C, ars, arsC-B, arsR, dsbA-C, copA, tehA-B, modA-C, modE, ibpA-B, sodA/B, pstA-C, ptsS, marA/R, acrA/B, baeR/S, evgA/S, ydeO-P, bcr, cueO, fabI, glpF, iclR, mgtA, mntR, nfsA, oxyRkp, phoB, pitA, robA, rpoS, sugE, tolC, ychH, ydeI, ygiW, yhcN, yieF, yodD, ygjH, acrD/yffA, acrE/envC, acrF/envD, acrR/YbaH, actP/yjcG, bhsA/ycfR/comC, comR/ycfQ, cueR/ybbI, cusA/ybdE, cusC/ylcB, cusR/ylcA, cutE/Int, cutF/nlpE, emrE/mvrC, fetA/ybbL, fetB/ybbM, fieF/yiip, gadC/xasA, gadE/yhiE, gadW/yhiW, hdeA/yhiB, hdeB/yhiC, mdfA/cmr, mdtA/yegM, mdtB/yegN, mdtC/yegO, mdtE/yhiU, mdtF/yhiV, mdtG/yceE, mdtI/ydgE, mdtJ/ebrB/ydgF, mdtK/ydhE, mdtM/yjiO, mdtN/yjcR, mntH/yfeP, mntP/yebN, ostA/lptD, rcnA/yohM, rcnB/yohN, rcnR/yohL, ymgB/ariR, zinT/yodA, zitB/ybgR, zntA/yhhO, zntR/yhdM, znuA/yebL, znuB/yebI, znuC/yebM, zraR/hydH, zupT/ygiE, zur/yjbK | None |
Plasmid pEc1500_CTX | 91,123 | IncI1 | blaCTX-M-15, blaTEM-1 | None | None | traX, traV, traT, traS, traR, traQ, traP, traO, traN, traM, traJ, traE, traC, traA, traA, trbC, trbA, traW, traI | |
Plasmid pEc1500_2 | 4087 | Col8282 | None | None | None | None |