Table 5 Whole genome sequencing assembly statistics and nearest relative based on progressiveMAUVE [35, 36]
From: Discovery of thermophilic Bacillales using reduced-representation genotyping for identification
Group | Sample name | GenBank accession | Reads | contigs | Largest contig | Total length | N50 | GC (%) | Nearest relative based on MAUVE |
|---|---|---|---|---|---|---|---|---|---|
A | MR_LB_pH8 | SDLB00000000 | 3,295,260 | 153 | 166,175 | 3,592,399 | 61,995 | 48.89 | Geobacillus thermodenitrificans strain KCTC3902 |
B_mud_LB_pH8 | SDLA00000000 | 275,247 | 60 | 765,875 | 3,434,851 | 188,577 | 52.02 | Geobacillus vulcani PSS1 | |
B | NFOSA3 | SDLE00000000 | 2,067,951 | 111 | 273,724 | 3,334,687 | 72,143 | 42.13 | Geobacillus galactosidasius strain DSM 18751 |
DSP4a | SDLD00000000 | 885,071 | 188 | 271,123 | 3,273,238 | 58,160 | 52.32 | Geobacillus lituanicus strain N-3 | |
CHMud_LB_pH8 | SDLG00000000 | 636,456 | 67 | 226,012 | 2,712,590 | 137,053 | 41.81 | Anoxybacillus sp. 103 | |
Efil_LB_pH6.8 | SDLH00000000 | 777,211 | 53 | 596,376 | 2,794,302 | 321,229 | 41.90 | Anoxybacillus ayderensis strain AB04 | |
MMMud_3_LB_pH8 | SDLC00000000 | 1,174,246 | 1196 | 233,455 | 4,372,943 | 60,623 | 55.27 | Geobacillus subterraneus PSS2 | |
C | MCWH_LB_pH8 | SDLF00000000 | 1,349,927 | 124 | 345,578 | 3,934,072 | 177,957 | 56.20 | Anoxybacillus flavithermus strain B4168 |