Category | Gene | Primer | Sequence | Product (bp) | Reference |
---|---|---|---|---|---|
Resistance | mecA | mecA - f | CCTAGTAAAGCTCCGGAA | 314 | [59] |
mecA - r | CTAGTCCATTCGGTCCA | ||||
Aac(6′)/aph(2′) | Aac(6′)/aph(2′) - f | GAAGTACGCAGAAGAGA | 491 | [59] | |
Aac(6′)/aph(2′) - r | ACATGGCAAGCTCTAGGA | ||||
aph(3′)-IIIa | aph(3′)-IIIa - f | AAATACCGCTGCGTA | 242 | [59] | |
aph(3′)-IIIa - r | CATACTCTTCCGAGCAA′ | ||||
ant(4′)-Ia | ant(4′)-Ia - f | AATCGGTAGAAGCCCAA | 135 | [59] | |
ant(4′)-Ia - r | GCACCTGCCATTGCTA | ||||
tet(M) | tet(M) - f | AGTGGAGCGATTACAGAA | 360 | [60] | |
tet(M) - r | CATATGTCCTGGCGTGCTTA | ||||
tet(K) | tet(K) - f | GTAGCGACAATAGGTAATAGT | 158 | [60] | |
tet(K) - r | GTAGTGACAATAAACCTCCTA | ||||
blaZ | blaZ - f | ACTTCAACACCTGCTGCTTTC | 173 | [60] | |
blaZ - r | TGACCACTTTTATCAGCAACC | ||||
ermA | ermA - f | TATCTTATCGTTGAGAAGGGATT | 139 | [61] | |
ermA - r | CTACACTTGGCTTAGGATGAAA | ||||
ermB | ermB - f | CTATCTGATTGTTGAAGAAGGATT | 142 | [61] | |
ermB - r | GTTTACTCTTGGTTTAGGATGAAA | ||||
ermC | ermC - f | CTTGTTGATCACGATAATTTCC | 299 | [61] | |
ermC - r | ATCTTTTAGCAAACCCGTATTC | ||||
Multidrug Efflux Pump | tet38 | tet38 - f | TTCAGTTTGGTTATAGACAA | 400 | [61] |
tet38 - r | CGTAGAAATAAATCCACCTG | ||||
norA | norA - f | TGCAATTTCATATGATCAATCCC | 150 | [29] | |
norA - r | AGATTGCAATTCATGCTAAATAT | ||||
norB | norB - f | ATAAGGTAAGATAACTAGCA | 150 | [29] | |
norB - r | ATCTCTATTTGCCTCCCTATA | ||||
norC | norC - f | AAATGGTTCTAAGCGACCAA | 200 | [29] | |
norC - r | ATAAATACCTGAAGCAACGC | ||||
LmrS | LmrS - f | TAAAGTTGAATTAACAAC | 180 | [30] | |
LmrS - r | GCGGATCCTTAAAATTTC | ||||
mgrA | mgrA - f | CGAATTCATTCATGATTT | 200 | [61] | |
mgrA - r | AAAGTTGATTGTTTATTAA | ||||
msrA | msrA - f | TCCAATCATAGCACAAAATC | 163 | [61] | |
msrA - r | AATTCCCTCTATTTGGTGGT | ||||
Virulence | hla | hla - f | CTGATTACTATCCAAGAAATTCGATTG | 209 | [62] |
hla - r | CTTTCCAGCCTACTTTTTTATCAGT | ||||
fnbA | fnbA - f | GTGAAGTTTTAGAAGGTGGAAAGAITAG | 643 | [63] | |
fnbA - r | GCTCTTGTAAGACCATTTTTCTTCAC | ||||
fnbB | fnbB - f | GTAACAGCTAATGGTCGAATTGATACT | 524 | [63] | |
fnbB - r | CAAGTTCGATAGGAGTACTATGTTC | ||||
eta | eta - f | ACTGTAGGAGCTAGTGCATTTGT | 190 | [64] | |
eta - r | TGGATACTTTTGTCTATCTTTTTCATCAAC | ||||
etb | etb - f | CAGATAAAGAGCTTTATACACACATTAC | 621 | [64] | |
etb - r | AGTGAACTTATCTTTCTATTGAAAAACACTC | ||||
lukDE | lukDE - f | TGAAAAAGGTTCAAAGTTGATACGAG | 269 | [64] | |
lukDE - r | TGTATTCGATAGCAAAAGCAGTGCA | ||||
tst | tst- f | TTCACTATTTGTAAAAGTGTCAGACCCACT | 180 | [64] | |
tst - r | TACTAATGAATTTTTTTATCGTAAGCCCTT | ||||
sea | sea - f | ACGATCAATTTTTACAG | 544 | [65] | |
sea - r | TGCATGTTTTCAGAGTTAATC | ||||
seb | seb - f | GAATGATATTAATTCGCATC | 416 | [65] | |
seb - r | TCTTTGTCGTAAGATAAACTTC | ||||
sec | sec - f | GACATAAAAGCTAGGAATTT | 257 | [65] | |
sec - r | AAATCGGATTAACATTATCCA | ||||
sed | sed - f | CTAGTTTGGTAATATCTCCT | 317 | [65] | |
sed - r | TAATGCTATATCTTATAGGG | ||||
see | see - f | TAGATAAAGTTAAAACAAG | 170 | [65] | |
see - r | TAACTTACCGTGGACCCTTC | ||||
seg | seg - f | GTTAGAGGAGGTTTTATG | 198 | [65] | |
seg - r | TTCCTTCAACAGGTGGAGA | ||||
seh | seh - f | CAACTGCTGATTTAGCTCAG | 173 | [65] | |
seh - r | CCCAAACATTAGCACCA | ||||
sei | sei - f | GGCCACTTTATCAGGACA | 328 | [65] | |
sei - r | AACTTACAGGCAGTCCA | ||||
sej | sej - f | GTTCTGGTGGTAAACCA | 131 | [65] | |
sej - r | GCGGAACAACAGTTCTGA |