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Table 3 Cox proportional hazard ratios for common S. maltophilia and strain-specific genes

From: Identification and characterization of differentially expressed genes in Caenorhabditis elegans in response to pathogenic and nonpathogenic Stenotrophomonas maltophilia

      Relative to wildtype
NematodeBacteriaNMSEHazard Ratio
exp(β)
p value
 wildtypeOP5051610.590.23NA 
 K279a61510.870.19NA 
 JCMS6085.440.07NA 
 JV35802.530.03NA 
CPSR genesB0024.4OP502610.500.780.880.698
(mh82)K279a588.660.551.320.146
 JCMS904.740.161.280.14
 JV3582.060.071.54.03*
F08G2.5OP504610.430.770.990.988
(mh86)K279a5910.850.681.030.897
 JCMS575.390.231.100.696
 JV3592.720.070.910.68
ZK6.11OP504612.240.740.760.194
(ok3738)K279a5710.390.621.120.636
 JCMS584.470.142.191.33E-6*
 JV3562.270.081.410.07
T24B8.5OP505810.690.601.040.897
(ok3236)K279a6110.200.600.970.923
 JCMS604.880.161.410.053
 JV3571.940.072.238.9E-7*
dod-19OP505611.840.640.760.14
(ok2679)K279a609.800.571.130.577
 JCMS604.070.120.367.27E-11*
 JV3582.360.101.040.873
dod-22OP507410.220.541.230.216
(ok1918)K279a9013.230.410.830.216
 JCMS895.870.181.070.702
 JV3890.280.080.820.194
K08D8.4OP507910.950.660.920.696
(mh101)K279a907.620.502.111.46E-8*
 JCMS874.820.171.68.000154*
 JV3852.360.081.37.038*
lys-1OP508210.090.421.46.010*
(ok2445)K279a909.170.441.67.000147*
 JCMS884.760.141.921.33E-6*
 JV3862.770.080.780.129
clec-67OP507911.560.530.920.681
(ok2770)K279a5513.200.680.710.077
 JCMS575.460.241.060.8
 JV3532.670.101.000.988
lys-2OP508510.440.501.040.853
(tm2398)K279a5810.210.541.360.077
 JCMS585.710.190.920.698
 JV3552.590.081.130.606
F55G11.8OP505910.510.610.890.601
(gk3130)K279a5811.550.510.790.216
 JCMS605.650.190.800.217
 JV3572.440.100.920.698
scl-2OP505115.430.730.492.97E-5*
(tm2428)K279a5411.720.640.850.45
 JCMS565.750.171.000.988
 JV3552.420.121.240.268
VSR genesacdh-1OP50507.120.771.68.00688*
(ok1489)K279a598.530.491.74.00178*
 JCMS584.590.191.68.00427*
 JV3582.680.110.62.008*
sodh-1OP505310.550.641.090.698
(ok2799)K279a549.480.561.410.065
 JCMS564.710.151.7.00164*
 JV3552.50.110.970.897
pho-1OP505412.110.690.780.211
(tm5302)K279a5512.470.740.68.0405*
 JCMS554.580.182.221.33E-6*
 JV3602.330.111.360.088
C55A6.7OP505711.910.690.800.234
(tm6807)K279a5913.510.750.524.71E-5*
 JCMS595.390.151.130.6
 JV3572.40.071.370.077
acox-1.4OP50589.910.421.53.0137*
(tm6415)K279a606.20.334.10<2E-16*
 JCMS574.630.172.021.47E-5*
 JV3552.030.082.531.38E-8*
dhs-3OP5055120.671.200.37
(tm6151)K279a589.160.651.954.45E-5*
 JCMS554.870.152.414.04E-8*
 JV3552.040.082.972.31E-9*
F13D12.6OP505311.920.640.750.146
(tm7051)K279a5810.980.511.010.216
 JCMS5660.150.820.32
 JV3572.590.120.880.566
dhs-2OP50279.30.801.240.474
(tm7516)K279a537.720.431.78.00095*
 JCMS534.910.201.110.681
 JV3531.640.092.742.35E-11*
JSR genesnhr-110OP503014.230.770.52.00427*
(gk987)K279a589.690.570.950.853
 JCMS585.160.131.060.8
 JV3572.290.071.130.619
W02A2.8OP505911.270.560.980.929
(mh87)K279a5910.420.651.000.988
 JCMS595.220.171.290.15
 JV3572.350.11.310.14
  1. Mean survival (M), standard error of the mean (SE), and sample size (N), are given for each nematode genotype and bacterial treatment combination. Wild-type statistics were determined from combining all wild-type data from all experiments. Hazard ratios (natural log(β)) indicate the treatment hazard divided by the hazard of wild-type (first column) across all experiments. The hazard is defined as the probability of a nematode dying at a given time. Hazard ratios and associated FDR adjusted p-values for each comparison were determined using Cox proportional hazards mixed effects model and general linear hypothesis tests and applying the Benjamini-Hochberg procedure to adjust for multiple comparisons in R. Asterisk indicate significant p-values (p<0.05)