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Table 1 Sequence type according to MLST Oxford and antimicrobial resistance genes determined by PCR and WGS for 20 A. baumannii, 28 P. aeruginosa, and 14 S. marcescens

From: Comparison of methods for the detection of in vitro synergy in multidrug-resistant gram-negative bacteria

ID

Sequence Type

Antimicrobial resistance genes

Acinetobacter baumannii

 1

32

blaOXA-51,blaIMP-1, aacA4, aac(6′)-31, aadA1, fosA, aac(6′)Ib-cr, sul1

 2

ND

BlaOxa-51

 3

15

blaOXA-51, aph(3′)-Via,fosA,fosX,

 4

107

blaOXA-51, blaOXA-143,aadB, strA, strB,fosA, floR, sul2,

 5

ND

BlaOxa-51

 6

15

blaOXA-51,blaIMP, fosA,fosX

 7

ND

blaOXA-51, blaIMP

 8

317

blaOXA-117, aph(3′)-Via, FosA,FosX

 9

107

blaOXA-51,blaOXA-143, aph(3′)-Via, aadB, fosA, floR, sul2

 10

ND

blaOXA-51,blaOXA-143,blaIMP

 11

ND

blaOxa-51

 12

317

blaOXA-51, blaOXA-23, aph(3′)-Via, fosA,fosX,

 13

107

blaOXA-51,blaOXA-143, aph(3′)-VIa, aadB, strA, strB, fosA, floR,sul2

 14

79

blaOXA-23, blaOXA-65, blaTEM-1, aph(3′)-VIa, aadA1, strA, strB, fosA, sul2,dfrA1

 15

79

blaOXA-23, blaOXA-117, blaTEM-1, aph(3′)-VIa, aadA1, strA, strB, fosA, sul2,dfrA1

 16

836

blaOXA-117,blaTEM-1, aph(3′)-VIa, aadA1, strA, strB, fosA, dfrA1

 17

79

blaOXA-23, blaOXA-65, blaTEM-1, aph(3′)-VIa, aadA1, strA, strB, fosA,, sul2,dfrA1

 18

79

blaOXA-51, blaOXA-23, blaTEM-1, aph(3′)-VIa, aadA1, strA, strB, fosA, sul2,dfrA1

 19

317

blaOXA-51, blaOXA-23,fosA,

 20

79

blaOXA-117, blaTEM-1, aadA1, strA, strB, fosA, floR, sul2,dfrA1

Pseudomonas aeruginosa

 1

277

blaKPC, blaOXA-50, blaPAO,blaSPM-1,blaOXA-56, aph(3′)-IIb,aadA7, rmtD, aacA4, fosA, aac(6′)Ib-cr, cmx, catB7, sul1

 2

ND

blaKPC,blaSPM

 3

ND

blaKPC,blaSPM

 4

ND

blaKPC,blaSPM

 5

1853

blaKPC, blaOXA-50, blaPAO,aph(3′)-IIb, fosA, catB7

 6

ND

blaKPC,blaSPM

 7

ND

blaSPM

 8

ND

blaSPM

 9

ND

 10

ND

blaSPM

 11

277

blaOXA-50,blaPAO,blaSPM-1,blaOXA-56,aph(3′)-Iib, aadA7, aacA4, aac(6′)Ib-cr, cmx,catB8

 12

ND

blaSPM

 13

ND

blaSPM

 14

277

blaKPC, blaOXA-50,blaPAO,blaSPM-1,blaOXA-56, aph(3′)-IIb,aadA7, rmtD, aacA4, fosA, aac(6′)Ib-cr, cmx, catB7, sul1

 15

ND

 16

ND

 17

ND

blaSPM

 18

ND

blaSPM

 19

ND

blaSPM

 20

277

blaOXA-50,blaPAO,blaSPM-1,blaOXA-56,aph(3′)-IIb,aadA7, rmtD, aacA4, fosA, aac(6′)Ib-cr, catB7, sul1

 21

ND

blaSPM

 22

ND

blaSPM

 23

ND

 24

ND

blaSPM

 25

ND

blaSPM

 26

ND

 27

ND

blaSPM

 28

ND

blaSPM

Serratia marcescens

 1

NA

blaSRT-2, blaKPC-2, aph(3′)-VIa, aacA4, aac(6′)-Ic, ant(2″)-Ia, aac(6′)-Ib-cr, cat (pC194), sul2, dfrA8

 2

NA

blaSRT-2, blaKPC-2, aph(3′)-VIa, aacA4, aac(6′)-Ic, ant(2″)-Ia,aac(6′)-Ib-cr,sul2,dfrA8

 3

NA

blaSRT-2, blaKPC-2, aph(3′)-VIa, aacA4, aac(6′)-Ic, ant(2″)-Ia, aac(6′)-Ib-cr, cat (pC194), sul2

 4

NA

blaSRT-2, blaKPC-2,aph(3′)-VIa, aacA4, aac(6′)-Ic, ant(2″)-Ia, aac(6′)-Ib-cr,sul2, dfrA8

 5

NA

blaSRT-2, blaKPC-2, aph(3′)-VIa, aacA4, aac(6′)-Ic, ant(2″)-Ia,aac(6′)-Ib-cr,sul2, dfrA8

 6

NA

blaSRT-2, blaKPC-2, aph(3′)-VIa, aacA4,aac(6′)-Ic,ant(2″)-Ia,aac(6′)-Ib-cr,sul2, dfrA8

 7

NA

blaSRT-2, blaCTX-M-2, blaTEM-1A, blaOXA-101, aph(3′)-VIa, aadA6, aac(6′)-Ic, ant(2″)-Ia, cat (pC194), cmx, sul1, sul1, dfrA22

 8

NA

blaSRT-2, blaKPC-2, aph(3′)-VIa, aacA4, aac(6′)-Ic,ant(2″)-Ia, aac(6′)-Ib-cr, cat (pC194), sul2, dfrA8

 9

NA

blaSRT-2, aacA4, aac(6′)-Ic, ant(2″)-Ia, aac(6′)-Ib-cr, sul2, dfrA8

 10

NA

blaSRT-2, blaKPC-2, aacA4, aac(6′)-Ic, ant(2″)-Ia, aac(6′)-Ib-cr, sul2, dfrA8

 11

NA

blaSRT-2, blaKPC-2, blaSHV-5, aacA4, aac(6′)-Ic, ant(2″)-Ia, sul2, dfrA1

 12

NA

 13

NA

blaSRT-2, blaOXA-101, aph(3′)-VIa, aadA6, aac(6′)-Ic, ant(2″)-Ia, cmx,sul1, dfrA1

 14

NA

blaSRT-2, blaKPC-2, blaSHV-5, aacA4, aac(6′)-Ic, ant(2″)-Ia, aac(6′)-Ib-cr, sul2

  1. ID Isolates; ND not WGS; NA not applicable