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Table 1 Sequence type according to MLST Oxford and antimicrobial resistance genes determined by PCR and WGS for 20 A. baumannii, 28 P. aeruginosa, and 14 S. marcescens

From: Comparison of methods for the detection of in vitro synergy in multidrug-resistant gram-negative bacteria

IDSequence TypeAntimicrobial resistance genes
Acinetobacter baumannii
 132blaOXA-51,blaIMP-1, aacA4, aac(6′)-31, aadA1, fosA, aac(6′)Ib-cr, sul1
 2NDBlaOxa-51
 315blaOXA-51, aph(3′)-Via,fosA,fosX,
 4107blaOXA-51, blaOXA-143,aadB, strA, strB,fosA, floR, sul2,
 5NDBlaOxa-51
 615blaOXA-51,blaIMP, fosA,fosX
 7NDblaOXA-51, blaIMP
 8317blaOXA-117, aph(3′)-Via, FosA,FosX
 9107blaOXA-51,blaOXA-143, aph(3′)-Via, aadB, fosA, floR, sul2
 10NDblaOXA-51,blaOXA-143,blaIMP
 11NDblaOxa-51
 12317blaOXA-51, blaOXA-23, aph(3′)-Via, fosA,fosX,
 13107blaOXA-51,blaOXA-143, aph(3′)-VIa, aadB, strA, strB, fosA, floR,sul2
 1479blaOXA-23, blaOXA-65, blaTEM-1, aph(3′)-VIa, aadA1, strA, strB, fosA, sul2,dfrA1
 1579blaOXA-23, blaOXA-117, blaTEM-1, aph(3′)-VIa, aadA1, strA, strB, fosA, sul2,dfrA1
 16836blaOXA-117,blaTEM-1, aph(3′)-VIa, aadA1, strA, strB, fosA, dfrA1
 1779blaOXA-23, blaOXA-65, blaTEM-1, aph(3′)-VIa, aadA1, strA, strB, fosA,, sul2,dfrA1
 1879blaOXA-51, blaOXA-23, blaTEM-1, aph(3′)-VIa, aadA1, strA, strB, fosA, sul2,dfrA1
 19317blaOXA-51, blaOXA-23,fosA,
 2079blaOXA-117, blaTEM-1, aadA1, strA, strB, fosA, floR, sul2,dfrA1
Pseudomonas aeruginosa
 1277blaKPC, blaOXA-50, blaPAO,blaSPM-1,blaOXA-56, aph(3′)-IIb,aadA7, rmtD, aacA4, fosA, aac(6′)Ib-cr, cmx, catB7, sul1
 2NDblaKPC,blaSPM
 3NDblaKPC,blaSPM
 4NDblaKPC,blaSPM
 51853blaKPC, blaOXA-50, blaPAO,aph(3′)-IIb, fosA, catB7
 6NDblaKPC,blaSPM
 7NDblaSPM
 8NDblaSPM
 9ND
 10NDblaSPM
 11277blaOXA-50,blaPAO,blaSPM-1,blaOXA-56,aph(3′)-Iib, aadA7, aacA4, aac(6′)Ib-cr, cmx,catB8
 12NDblaSPM
 13NDblaSPM
 14277blaKPC, blaOXA-50,blaPAO,blaSPM-1,blaOXA-56, aph(3′)-IIb,aadA7, rmtD, aacA4, fosA, aac(6′)Ib-cr, cmx, catB7, sul1
 15ND
 16ND
 17NDblaSPM
 18NDblaSPM
 19NDblaSPM
 20277blaOXA-50,blaPAO,blaSPM-1,blaOXA-56,aph(3′)-IIb,aadA7, rmtD, aacA4, fosA, aac(6′)Ib-cr, catB7, sul1
 21NDblaSPM
 22NDblaSPM
 23ND
 24NDblaSPM
 25NDblaSPM
 26ND
 27NDblaSPM
 28NDblaSPM
Serratia marcescens
 1NAblaSRT-2, blaKPC-2, aph(3′)-VIa, aacA4, aac(6′)-Ic, ant(2″)-Ia, aac(6′)-Ib-cr, cat (pC194), sul2, dfrA8
 2NAblaSRT-2, blaKPC-2, aph(3′)-VIa, aacA4, aac(6′)-Ic, ant(2″)-Ia,aac(6′)-Ib-cr,sul2,dfrA8
 3NAblaSRT-2, blaKPC-2, aph(3′)-VIa, aacA4, aac(6′)-Ic, ant(2″)-Ia, aac(6′)-Ib-cr, cat (pC194), sul2
 4NAblaSRT-2, blaKPC-2,aph(3′)-VIa, aacA4, aac(6′)-Ic, ant(2″)-Ia, aac(6′)-Ib-cr,sul2, dfrA8
 5NAblaSRT-2, blaKPC-2, aph(3′)-VIa, aacA4, aac(6′)-Ic, ant(2″)-Ia,aac(6′)-Ib-cr,sul2, dfrA8
 6NAblaSRT-2, blaKPC-2, aph(3′)-VIa, aacA4,aac(6′)-Ic,ant(2″)-Ia,aac(6′)-Ib-cr,sul2, dfrA8
 7NAblaSRT-2, blaCTX-M-2, blaTEM-1A, blaOXA-101, aph(3′)-VIa, aadA6, aac(6′)-Ic, ant(2″)-Ia, cat (pC194), cmx, sul1, sul1, dfrA22
 8NAblaSRT-2, blaKPC-2, aph(3′)-VIa, aacA4, aac(6′)-Ic,ant(2″)-Ia, aac(6′)-Ib-cr, cat (pC194), sul2, dfrA8
 9NAblaSRT-2, aacA4, aac(6′)-Ic, ant(2″)-Ia, aac(6′)-Ib-cr, sul2, dfrA8
 10NAblaSRT-2, blaKPC-2, aacA4, aac(6′)-Ic, ant(2″)-Ia, aac(6′)-Ib-cr, sul2, dfrA8
 11NAblaSRT-2, blaKPC-2, blaSHV-5, aacA4, aac(6′)-Ic, ant(2″)-Ia, sul2, dfrA1
 12NA
 13NAblaSRT-2, blaOXA-101, aph(3′)-VIa, aadA6, aac(6′)-Ic, ant(2″)-Ia, cmx,sul1, dfrA1
 14NAblaSRT-2, blaKPC-2, blaSHV-5, aacA4, aac(6′)-Ic, ant(2″)-Ia, aac(6′)-Ib-cr, sul2
  1. ID Isolates; ND not WGS; NA not applicable