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Fig. 3 | BMC Microbiology

Fig. 3

From: Whole-genome sequence-based comparison and profiling of virulence-associated genes of Bacillus cereus group isolates from diverse sources in Japan

Fig. 3

Phylogenic analysis using core-genome SNP typing. The phylogenetic tree is estimated from the core genome alignment generated by Parsnp using the Japanese isolates and B. cereus group isolates from countries other than Japan. The neighbor-joining algorithm was based on the core-genome SNP typing of the strains. Bootstrap confidence values were generated using 1000 permutations. The B. cereus ATCC 14579 strain (GenBank: NC_004722) was used as the reference genome in the analysis. The sources of the Japanese isolates are indicated by the following colored rectangles: animal (orange), food poisoning (dark green), hospital (blue green), and soil (purple)

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BMC Microbiology

ISSN: 1471-2180

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