Target | Primer | Sequence (5′-3′) | Annealing temperature (°C) | Amplicon length (bp) | Reference |
---|---|---|---|---|---|
aphA6 | aphA6F | CATTTGCGGGGTTTTTAATG | 59 | 837 | This study |
aphA6R | TTAGATAATGCTTGGAATCA | ||||
ISAba125-aphA6 | RH573 | AAGAAGGCTTTTCAGCCAGA | 58 | 1427 | [8] |
aphA6R | GGACAATCAATAATAGCAAT | [22] | |||
aphA6-ISAba125 | aphA6F | ATACAGAGACCACCATACAGT | 58 | 1745 | [22] |
RH574 | CAAACATGAGGTGCGACAGT | [8] | |||
repAci6 | gr6FW | AGCAAGTACGTGGGACTAAT | 59 | 662 | [12] |
gr6RV | AAGCAATGAAACAGGCTAAT | [12] | |||
TnaphA6_L | RH1501 | CTTGAGGAAGGGATGGTTGA | 59 | 1930 | [9] |
aphA6R | GGACAATCAATAATAGCAAT | [22] | |||
TnaphA6_R | aphA6F | ATACAGAGACCACCATACAGT | 59 | 2540 | [22] |
RH1502 | TTGCTTTAATCGGTGGTTCC | [9] | |||
Repeated sequence 1 | RH1398 | TTTGACGTTGCTCTTGTTGC | 58 | 991 | [9] |
RH1399 | TTCTCCCAAGTGGTCAGGTC | [9] | |||
Repeated sequence 2 | RH1394 | TGGTTGGCAGAACAAGATGA | 58 | 1372 | [9] |
RH1395 | TCAAACGATGCAATGGAAGA | [9] | |||
Repeated sequence 3 | RH1503 | GAAGATCCAGAAGCGGGATA | 58 | 1575 | [9] |
RH1397 | CCATGTTCTTTTCCACATGC | [9] |