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Table 3 Number of differentially regulated genes located on plasmids and the chromosome (padj. < 0.05) for E. coli O157:H7 Sakai, E. coli O157:H 3072/96 and E. coli O104:H4 C227–11φcu grown in lamb’s lettuce medium vs. M9 minimal medium, based on the respective reference genome of each strain

From: Differential transcriptome analysis of enterohemorrhagic Escherichia coli strains reveals differences in response to plant-derived compounds

  E. coli O157:H7 str. Sakai E. coli O157:H str. 3072/96 E. coli O104:H4 str. C227–11φcu
Plasmid genes total (up/down) 5 (3/2) 10 (4/6) 33 (6/27)
Chromosomal genes total (%) 1694 (31.62) 1487 (24.45) 1002 (17.99)
Chromosomal genes upregulated (%) 854 (15.94) 803 (13.20) 480 (8.62)
Chromosomal genes downregulated (%) 840 (15.68) 684 (11.25) 522 (9.37)