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Table 1 List of the 20 most differentially upregulated genes of the shared genome of the three E. coli strains in lamb’s lettuce medium vs. M9 minimal medium containing 0.4% (w/v) glucose

From: Differential transcriptome analysis of enterohemorrhagic Escherichia coli strains reveals differences in response to plant-derived compounds

   log2FC
Gene symbol Gene descriptiona O157:H str. 3072/96 O104:H4 str. C227–11ϕcu O157:H7 str. Sakai
lacZ beta-galactosidase 6.77 7.08 5.78
garP galactarate/glucarate/glycerate transporter GarP 6.75 8.30 3.80
xylF xylose ABC transporter periplasmic binding protein 8.27 5.14 3.01
yjiY pyruvate:H(+) symporter 5.79 6.81 3.11
rbsA ribose ABC transporter ATP binding subunit 4.99 6.45 3.81
yqhD NADPH-dependent aldehyde reductase YqhD 4.97 4.45 5.50
galE UDP-glucose 4-epimerase 4.15 3.05 4.51
glpT sn-glycerol 3-phosphate:phosphate antiporter 4.88 5.13 1.12
mntP Mn(2(+)) exporter 4.97 2.23 3.85
sdaC serine:H(+) symporter SdaC 3.42 3.17 4.44
dkgB methylglyoxal reductase DkgB 2.65 2.01 6.00
yqeG putative transporter YqeG 3.22 3.36 3.96
galT galactose-1-phosphate uridylyltransferase 3.89 3.08 3.48
nemR DNA-binding transcriptional repressor NemR 2.81 2.66 4.72
glpD aerobic glycerol 3-phosphate dehydrogenase 3.42 4.75 1.97
yqhC DNA-binding transcriptional activator YqhC 3.37 2.80 3.67
rbsC ribose ABC transporter membrane subunit 6.18 2.22 1.41
sdaB L-serine deaminase II 1.92 3.17 4.50
fruA fructose-specific PTS multiphosphoryl transfer protein FruA 1.61 4.10 3.38
yecR lipoprotein YecR 1.67 4.47 2.67
  1. aGene descriptions were retrieved from the NCBI database