From: Contrasting diversity of vaginal lactobacilli among the females of Northeast India
Sl. No. | Accession No. | No. of sequences derived | Species identified by homology search with database | Characteristic ML clustering as seen in Additional file 6: Figure S1 |
---|---|---|---|---|
1 | KU184494 | 1 | Bacillus subtilis | Clustered distinct |
2 | KT906577 KT906579 KT906580 | 3 | Bifidobacterium breve | Clustered distinct |
3 | KR264992 | 1 | Enterococcus avium | The four species of Enterococcus genus clustered cohesively |
4 | KR265008 KT906587 KU184461 | 39 | Enterococcus faecalis | |
KU184462 KU184464 KU184465 | ||||
KU184460 KT906572 KU184469 | ||||
KU184496 KU184470 KU184471 | ||||
KU184472 KT906573 KU184498 | ||||
KU184474 KT589112 KT589114 | ||||
KT589115 KT589124 KR265004 | ||||
KT589118 KT005519 KT005522 | ||||
KT589119 KT589120 KT589122 | ||||
KT589125 KT589126 KT589137 | ||||
KT589136 KT589128 KT589105 | ||||
KT589107 KT589108 KT589109 | ||||
KT589110 KU184479 KT589111 | ||||
5 | KP775931 KP775933 | 2 | Enterococcus faecium | |
6 | KU184480 KR264993 KR264996 | 6 | Enterococcus hirae | |
KU184476 KU184477 KU184478 | ||||
7 | KT005520 KT589121 | 2 | Escherichia coli | Clustered distinct |
8 | KP747671 KT597700 KP775922 | 3 | Janthinobacterium lividum | Clustered distinct |
9 | KT906585 | 1 | Kocuria kristinae | Clustered distinct |
10 | KT361204 KT589116 KT589117 | 5 | Lactobacillus brevis | Clustered distinct |
KT589132 KT589133 | ||||
11 | KU184473 KU184499 KP775929 | 10 | Lactobacillus fermentum | Clustered distinct |
KT589130 KP775934 KP775923 | ||||
KT589106 KR264983 KR264984 | ||||
KR264986 | ||||
12 | KP775927 | 1 | Lactobacillus gallinarum | Clustered together with Lactobacillus helviticus |
13 | KT991842 KT991843 KU184463 | 6 | Lactobacillus gasseri | Clustered distinct |
KU184466 KP775925 KR264987 | ||||
14 | KT361211 KT361209 KP775926 | 3 | Lactobacillus helveticus | Clustered together with Lactobacillus gallinarum |
15 | KU184500 KU184475 | 2 | Lactobacillus ingluviei | Clustered distinct |
16 | KT906576 KT906578 KT906588 | 3 | Lactobacillus jensenii | Clustered distinct |
17 | KT835013 KT835015 KT835018 | 25 | Lactobacillus mucosae* | Clustered distinct and showed deep intraspecies divergence |
KT835007 KT835008 KT835009 | ||||
KT835010 KT835011 KT835012 | ||||
KT991844 KU184467 KU184468 | ||||
KU184495 KU184497 KT597696 | ||||
KU184483 KU184484 KU184485 | ||||
KU184486 KU184487 KU184488 | ||||
KU184489 KU184490 KU184491 | ||||
KR264981 | ||||
18 | KP775924 | 1 | Lactobacillus parafarraginis | Clustered distinct |
19 | KR264991 KR264988 | 2 | Lactobacillus reuteri | Clustered distinct |
20 | KT906581 KT906582 KT906583 | 6 | Propionibacterium avidum | Clustered distinct |
KT906584 KT906571 KU184493 | ||||
21 | KT906569 | 1 | Staphylococcus capitis | The six species of Staphylococcus genus clustered cohesively |
22 | KR264994 KR264997 KR265000 | 3 | Staphylococcus caprae | |
23 | KR265006 KT361206 KT361207 | 8 | Staphylococcus epidermidis | |
KP747672 KT589123 KT589127 | ||||
KT589131 KT589135 | ||||
24 | KT005521 | 1 | Staphylococcus haemolyticus | |
25 | KT589113 KP775928 KR264995 | 8 | Staphylococcus hominis | |
KR264998 KR265001 KP775932 | ||||
KR264999 KR264989 | ||||
26 | KT906586 | 1 | Staphylococcus kloosii | |
27 | KT906589 KT906574 KT906575 | 3 | Streptococcus agalactiae | Clustered distinct |
28 | KT835014 KT906568 KT906570 | 3 | Streptococcus anginosus | Clustered distinct |
29 | KT835016 KT835017 | 2 | Streptococcus gallolyticus | Clustered distinct |
30 | KR264982 | 1 | Streptococcus infantarius | Clustered distinct |
31 | KT361205 | 1 | Weissella confusa | Clustered distinct |