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Table 1 A selected subset of the most effective knockouts in terms of their ability to affect the uptake of diS-C3(5)

From: Involvement of multiple influx and efflux transporters in the accumulation of cationic fluorescent dyes by Escherichia coli

Gene

Comments

Uniprot ID

Representative reference(s)

atpB

F1-ATPase subunit

P0ABB0

[122]

atpA

F1-ATPase subunit

P0AB98

[122]

ycdG (rutG)

Broad-specificity pyrimidine permease

P75892

[123,124,125]

rbsB

Ribose ABC transporter periplasmic binding protein

P02925

[126]

ybiO

mechanosensitive ion channel

P75783

[127]

yifK

probable transport protein (possibly amino acid)

P27837

[128]

yliA/gsiA

ATP-driven Glutathione importer

P75796

[129]

ybiR

Inner membrane protein

P75788

(none)

yccS

Inner membrane protein

P75870

(none)

phoR

Phosphate sensor regulon

P08400

[130]

yejA

Putative oligopeptide ABC transporter periplasmic binding protein

P33913

[131]

mdtI

Spermidine export protein

P69210

[132, 133]

mdtJ

Spermidine export protein

P69212

[133]

mdtL

Multidrug resistance protein (e.g. vs chloramphenicol)

P31462

[133]

mdtA

Multidrug resistance protein (e.g. vs novobiocin)

P76397

[134]

acrA

Multidrug efflux pump subunit

P0AE06

[135]

ybbW

Putative allantoin permease

P75712

[136]

ydcS

Part of ABC transporter complex, possibly involved in poly-β-hydroxybutyrate synthesis/ polyamine efflux

P76108

[137]

ygfQ (ghxQ)

Hypoxanthine-guanine permease

Q46817

[138]

  1. Those whose knockout increased uptake are given in bold face