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Table 1 Oligonucleotide used for amplification in the PCR

From: Characterization of CMY-2-type beta-lactamase-producing Escherichia coli isolated from chicken carcasses and human infection in a city of South Brazil

TargetGeneOligonucleotide sequence (5′ to 3′)References
blaESBLblaCTX-M-1 groupF- AAA AAT CAC TGC GCC AGT TC[17]
R- AGC TTA TTC ATC GCC ACG TT
blaCTX-M2 groupF- CGA CGC TAC CCC TGC TAT T
R- CCA GCG TCA GAT TTT TCA GG
blaCTX-M8 groupF- TCG CGT TAA GCG GAT GAT GC
R- AAC CCA CGA TGT GGG TAG C
blaCTX-M9 groupF- CAA AGA GAG TGC AAC GGA TG
R- ATT GGA AAG CGT TCA TCA CC
blaCTX-M25 groupF- GCA CGA TGA CAT TCG GG
R- AAC CCA CGA TGT GGG TAG C
blaTEMF- CAT TTC CGT GTC GCC CTT ATT C[18]
R- CGT TCA TCC ATA GTT GCC TGA C
blaSHVF- CAC TCA AGG ATG TAT TGT G[19]
R- TTA GCG TTG CCA GTG CTC G
blapAmpCblaMOX-1, blaMOX-2, blaCMY-1, blaCMY-8 to blaCMY-11F- GCT GCT CAA GGA GCA CAG GAT[7]
R- CAC ATT GAC ATA GGT GTG GTG C
blaLAT-1 to blaLAT-4, blaCMY-2 to blaCMY-7, blaBIL-1F- TGG CCA GAA CTG ACA GGC AAA
R- TTT CTC CTG AAC GTG GCT GGC
blaDHA-1 and blaDHA-2F- AAC TTT CAC AGG TGT GCT GGG T
R- CCG TAC GCA TAC TGG CTT TGC
blaACCF- AAC AGC CTC AGC AGC CGG TTA
R- TTC GCC GCA ATC ATC CCT AGC
blaMIR-1T, blaACT-1F- TCG GTA AAG CCG ATG TTG CGG
R- CTT CCA CTG CGG CTG CCA GTT
blaFOX-1 to blaFOX-5bF- AAC ATG GGG TAT CAG GGA GAT G
R- CAA AGC GCG TAA CCG GAT TGG
blaCMY-2, blaCMY-4, blaCMY-6, blaCMY-7, blaCMY-12, blaCMY-13, blaCMY-14, blaCMY-18, blaLAT-3F- ATG ATG AAA AAA TCG TTA TGC TGC[20]
R- GCT TTT CAA GAA TGC GCC AGG
PMQRqnrAF- AGA GGA TTT CTC ACG CCA GG[21]
R- TGC CAG GCA CAG ATC TTG AC
qnrBF- GGM ATH GAA ATT CGC CAC TG
R- TTT GCY GYY CGC CAG TCG AA
qnrSF- GCA AGT TCA TTG AAC AGG GT
R- TCT AAA CCG TCG AGT TCG GCG
Tetracycline resistancetetAF- GCC TTT CCT TTG GGT TCT CT[22]
R- TGT CCG ACA AGT TGC ATG AT
tetBF- GCT TTC AGG GAT CAC AGG AG
R- GAC CAA GAC CCG CTA ATG AA
Sulfonamide resistancesulIF- ACG AGA TTG TGC GGT TCT TC[22]
R- GGT TTC CGA GAT GGT GAT TG
sulIIF- CCG TCT CGC TCG ACA GTT AT
R- GTG TGT GCG GAT GAA GTC AG
Insertion sequenceISEcp1 - CMYF- AAA AAT GAT TGA AAG GTG GT[7, 23]
R- TTT CTC CTG AAC GTG GCT GGC