From: rpoB, a promising marker for analyzing the diversity of bacterial communities by amplicon sequencing
Taxonomic assignment based on Sanger sequencing of | ||||
---|---|---|---|---|
Strain name | Phylum | The entire 16S rRNA gene1 | The V3 V4 region2,3 | The rpoB region2,3 |
F1 | γ-Proteobacteria | X. nematophila | Xenorhabdus | X. nematophila |
TT01 | P. luminescens | Photorhabdus | P. luminescens | |
TUR03–22 | S. liquefaciens | Serratia | S. liquefaciens | |
SW4 | P. protegens | Pseudomonas | P. protegens | |
SK39-ApoA | P. chlororaphis | Pseudomonas | P. chlororaphis | |
SW5 | P. putida | Pseudomonas | P. putida | |
B163 | S. maltophilia | Stenotrophomonas | S. maltophilia | |
FR211A | Acinetobacter sp. | Acinetobacter | Acinetobacter | |
SC | β-Proteobacteria | A. faecalis | Alcaligenes | A. faecalis |
SK39-ApoC | Achromobacter | Achromobacter | Achromobacter | |
MW8A4 | Delftia sp. | Delftia | D. acidovorans | |
BS3–2-1 | Variovorax sp. | Variovorax | V. paradoxus | |
173 | Acidovorax sp. | Acidovorax | Acidovorax sp | |
Sphingo | ά-Proteobacteria | Sphingomonas sp. | Sphingomonas | Sphingomonas |
TCH07-Apo2–4 | Brevundimonas sp. | Brevundimonas | B. diminuta | |
SW2 | O. anthropi | Brucellacae | O. anthropi | |
FR211C | Bacteroidetes | Sphingobacterium sp. | Sphingobacterium | Sphingobacterium |
SK72–2 | Fimicutes | Paenibacillus sp. | Paenibacillus | Paenibacillus |
SG4 | E. mundtii | Enterococcus | E. mundtii |