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Table 3 Selected stress tolerance, symbiotic and plant growth promoting functional genes found in the genome of Rhizobium sp. strain R1

From: Genomic insights into plant growth promoting rhizobia capable of enhancing soybean germination under drought stress

Feature ID Type Function Aliases Start Length Location
Exo X
 JKFNCFJO_00944 gene Signal transduction histidine-protein kinase BaeS baeS_1, 2.7.13.3 762 288 Contig: NODE_1409_length_750_cov_2.449333
474–762 (− Strand)
 JKFNCFJO_01811 gene Exodeoxyribonuclease III xthA, 3.1.11.2 47 342 Contig:NODE_2692_length_718_cov_3.898329
47–389 (+ Strand)
HtrA
 JKFNCFJO_06099 gene Extracellular serine protease 3.4.21.- 16 255 Contig: NODE_11432_length_1141_cov_2.421560
16–271 (+Strand)
 JKFNCFJO_02038 gene Microbial serine proteinase aspA, 3.4.21.- 2164 792 Contig:NODE_3069_length_2224_cov_3.164568
1,372–2,164 (−strand)
Nif genes
 JKFNCFJO_00231 gene Cysteine desulfurase SufS sufS, 2.8.1.7 11 327 Contig: NODE_344_length_1119_cov_2.287757
11–338 (+Strand)
 JKFNCFJO_04114 gene Cysteine desulfurase IscS iscS, 2.8.1.7 1,664 462 Contig: NODE_6900_length_1667_cov_2.808638
1,202–1,664 (−Strand)
Nod A
 JKFNCFJO_00001 gene putative MFS-type transporter YcaD ycaD_1 93 642 Contig: NODE_1_length_1071_cov_2.464052
93–735 (+Strand)
 JKFNCFJO_00002 gene Riboflavin transporter ribN 1,091 357 Contig: NODE_1_length_1071_cov_2.464052
734–1,091 (− Strand)
Siderophore
 JKFNCFJO_00628 gene Catecholate siderophore Receptor Fiu fiu 1,424 762 Contig: NODE_980_length_1476_cov_2.882791
662–1,424 (− Strand)
 JKFNCFJO_07774 gene 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase dhbA, 1.3.1.28 59 513 Contig: NODE_18194_length_629_cov_2.839428
59–572 (+ Strand)
IAA
 JKFNCFJO_03956_CDS CDS Isoaspartyl peptidase iaaA, 3.4.19.5 704 168 Contig: NODE_6586_length_704_cov_2.566761
536–704 (− Strand
 JKFNCFJO_03956 gene Isoaspartyl peptidase iaaA, 3.4.19.5 704 168 Contig: NODE_6586_length_704_cov_2.566761
536–704 (−Strand)
EptA gene
 JKFNCFJO_06547 gene UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase mpl, 6.3.2.45 782 1,365 Contig: NODE_12707_length_2871_cov_2.986416
782–2,147 (+ Strand)
 JKFNCFJO_05747 gene Phosphoethanolamine transferase EptA eptA_3, 2.7.-.- 42 534 Contig: NODE_10489_length_1026_cov_2.685185
42–576 (+Strand)