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Table 1 List of proteins enhanced in biofilm stages of E. faecalis SK460

From: Decoding the proteomic changes involved in the biofilm formation of Enterococcus faecalis SK460 to elucidate potential biofilm determinants

NCBI-ID

Pathways/cellular processes

Amino acid metabolism

 NP_816782.1

Succinyl-diaminopimelate desuccinylase (EF_3178)

 NP_816328.1

MTA/SAH nucleosidase (pfs)

 NP_815300.1

Cysteine synthase A (cysK)

 NP_815281.1

Chorismate synthase (aroC)

 NP_815821.1

Glutamine synthetase, type I (glnA)

 NP_814529.1

S-adenosylmethionine synthetase (metK)

 NP_815283.1

3-phosphoshikimate 1-carboxyvinyltransferase (aroA)

 NP_816193.1

Serine hydroxymethyltransferase (glyA)

 NP_816069.1

Threonine synthase (thrC)

 NP_815279.1

3-deoxy-7-phosphoheptulonate synthase (EF_1562)

 NP_816700.1

Bifunctional glutamate--cysteine ligase/glutathione synthetase (gshF)

 NP_816650.1

Glutamyl-aminopeptidase (pepA)

 NP_814940.1

Acetolactate synthase (EF_1213)

 NP_815294.1

Dihydrofolate reductase (folA)

Glycolysis, citric acid cycle, pentose phosphate pathway

 NP_815638.1

Triosephosphate isomerase (tpiA)

 NP_815639.1

Phosphoglycerate kinase (pgk)

 NP_814897.1

Fructose-bisphosphate aldolase (fba)

 NP_813994.1

Phosphoglycerate mutase (gpmA)

 NP_815245.1

Glyceraldehyde 3-phosphate dehydrogenase (gap-1)

 NP_815637.1

Enolase (eno)

 NP_815137.1

Glucose-6-phosphate isomerase (pgi)

 NP_815075.1

Pyruvate dehydrogenase complex, E1 component subunit beta (pdhB)

 NP_815076.1

Dihydrolipoamide acetyltransferase (aceF)

 NP_816104.1

Pyruvate carboxylase (pycA)

 NP_813976.1

Deoxyribose-phosphate aldolase (deoC)

 NP_813986.1

Phosphopentomutase (deoB)

 NP_814782.1

6-phosphogluconate dehydrogenase (gnd)

Stress response, chaperones and DNA repair

 NP_814237.1

OsmC/Ohr family protein (EF_0453)

 NP_816831.1

Dps family protein (EF_3233)

 NP_816649.1

Thioredoxin family protein (EF_3036)

 NP_814938.1

NADH peroxidase (npr)

 NP_815447.1

General stress protein (EF_1744)

 NP_816369.1

Alkyl hydroperoxide reductase subunit C (ahpC)

 NP_813885.1

gls24 protein

 NP_816648.1

Universal stress protein (EF_3035)

 NP_816867.1

Glutathione reductase (gor)

 NP_816700.1

Bifunctional glutamate--cysteine ligase/glutathione synthetase (gshF)

 NP_816368.1

Thioredoxin reductase/glutathione-like protein (EF_2738)

 NP_814049.1

L-lactate dehydrogenase (ldh1)

 NP_816550.1

AhpC/TSA family protein (EF_2932)

 NP_815246.2

GTPase ObgE

 NP_815059.1

Thioredoxin reductase (trxB)

 NP_815353.1

Transcriptional repressor CodY (codY)

 NP_816010.1

ATP-dependent Clp protease, ATP-binding protein ClpB (clpB)

 NP_814518.1

ATP-dependent Clp protease proteolytic subunit (clpP)

 NP_816516.1

Cyclophilin type peptidyl-prolyl cis-trans isomerase (EF_2898)

 NP_814457.1

ATP-dependent Clp protease, ATP-binding protein ClpE (clpE)

 NP_816532.1

Transcription elongation factor GreA

 NP_815030.1

dnak protein

 NP_815032.1

dnaJ protein

 NP_815029.1

Heat shock protein GrpE (grpE)

 NP_814465.1

Trigger factor (TIG)

 NP_816273.1

GroS (10 kDa chaperonin)

 NP_816272.1

GroL(60 kDa chaperonin)

 NP_814060.1

Fn1610 (33 kDa chaperonin) (hslO)

 NP_814686.1

Uracil-DNA glycosylase (ung)

 NP_814720.1

DNA repair protein RecN (recN)

Rhamnose biosynthesis

 NP_815854.1

dTDP-glucose 4,6-dehydratase (rfbB)

 NP_815853.1

dTDP-4-dehydrorhamnose reductase (EF_2191)

 NP_815856.1

Glucose-1-phosphate thymidylyltransferase (rfbA)

Arginine metabolism

 NP_813908.1

Ornithine carbamoyltransferase (arcB)

 NP_815423.1

Carbamoyl phosphate synthase small subunit (carA)

 NP_814373.1

Ornithine cyclodeaminase (EF_0616)

 NP_813909.1

Carbamate kinase (arcC1)

 NP_813907.1

Arginine deiminase (arcA)

 NP_814719.1

ArgR family transcriptional regulator (EF_0983)

Quorum sensing and pheromone associated lipoprotein

 NP_814911.1

S-ribosylhomocysteinase (luxS)

 NP_816853.1

Pheromone cAD1 lipoprotein (EF_3256)

 NP_814793.1

Pheromone binding protein (EF_1060)

 NP_815061.1

Pheromone cAM373 lipoprotein (EF_1340)

Adhesion associated proteins

 NP_814266.1

Aggregation substance (EF_0485)

 NP_814342.1

Adhesion lipoprotein (EF_0577)

 NP_814975.1

Fibronectin/fibrinogen binding protein (EF_1249)

Autolysin and D-Alanylation of teichoic acid

 NP_814543.1

Autolysin (EF_0799)

 NP_816376.1

D-alanine--poly(phosphoribitol) ligase subunit 2 (dltC)

 NP_816375.1

dltD protein (dltD)