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Table 1 List of proteins enhanced in biofilm stages of E. faecalis SK460
| NCBI-ID | Pathways/cellular processes |
|---|---|
| Amino acid metabolism | |
| NP_816782.1 | Succinyl-diaminopimelate desuccinylase (EF_3178) |
| NP_816328.1 | MTA/SAH nucleosidase (pfs) |
| NP_815300.1 | Cysteine synthase A (cysK) |
| NP_815281.1 | Chorismate synthase (aroC) |
| NP_815821.1 | Glutamine synthetase, type I (glnA) |
| NP_814529.1 | S-adenosylmethionine synthetase (metK) |
| NP_815283.1 | 3-phosphoshikimate 1-carboxyvinyltransferase (aroA) |
| NP_816193.1 | Serine hydroxymethyltransferase (glyA) |
| NP_816069.1 | Threonine synthase (thrC) |
| NP_815279.1 | 3-deoxy-7-phosphoheptulonate synthase (EF_1562) |
| NP_816700.1 | Bifunctional glutamate--cysteine ligase/glutathione synthetase (gshF) |
| NP_816650.1 | Glutamyl-aminopeptidase (pepA) |
| NP_814940.1 | Acetolactate synthase (EF_1213) |
| NP_815294.1 | Dihydrofolate reductase (folA) |
| Glycolysis, citric acid cycle, pentose phosphate pathway | |
| NP_815638.1 | Triosephosphate isomerase (tpiA) |
| NP_815639.1 | Phosphoglycerate kinase (pgk) |
| NP_814897.1 | Fructose-bisphosphate aldolase (fba) |
| NP_813994.1 | Phosphoglycerate mutase (gpmA) |
| NP_815245.1 | Glyceraldehyde 3-phosphate dehydrogenase (gap-1) |
| NP_815637.1 | Enolase (eno) |
| NP_815137.1 | Glucose-6-phosphate isomerase (pgi) |
| NP_815075.1 | Pyruvate dehydrogenase complex, E1 component subunit beta (pdhB) |
| NP_815076.1 | Dihydrolipoamide acetyltransferase (aceF) |
| NP_816104.1 | Pyruvate carboxylase (pycA) |
| NP_813976.1 | Deoxyribose-phosphate aldolase (deoC) |
| NP_813986.1 | Phosphopentomutase (deoB) |
| NP_814782.1 | 6-phosphogluconate dehydrogenase (gnd) |
| Stress response, chaperones and DNA repair | |
| NP_814237.1 | OsmC/Ohr family protein (EF_0453) |
| NP_816831.1 | Dps family protein (EF_3233) |
| NP_816649.1 | Thioredoxin family protein (EF_3036) |
| NP_814938.1 | NADH peroxidase (npr) |
| NP_815447.1 | General stress protein (EF_1744) |
| NP_816369.1 | Alkyl hydroperoxide reductase subunit C (ahpC) |
| NP_813885.1 | gls24 protein |
| NP_816648.1 | Universal stress protein (EF_3035) |
| NP_816867.1 | Glutathione reductase (gor) |
| NP_816700.1 | Bifunctional glutamate--cysteine ligase/glutathione synthetase (gshF) |
| NP_816368.1 | Thioredoxin reductase/glutathione-like protein (EF_2738) |
| NP_814049.1 | L-lactate dehydrogenase (ldh1) |
| NP_816550.1 | AhpC/TSA family protein (EF_2932) |
| NP_815246.2 | GTPase ObgE |
| NP_815059.1 | Thioredoxin reductase (trxB) |
| NP_815353.1 | Transcriptional repressor CodY (codY) |
| NP_816010.1 | ATP-dependent Clp protease, ATP-binding protein ClpB (clpB) |
| NP_814518.1 | ATP-dependent Clp protease proteolytic subunit (clpP) |
| NP_816516.1 | Cyclophilin type peptidyl-prolyl cis-trans isomerase (EF_2898) |
| NP_814457.1 | ATP-dependent Clp protease, ATP-binding protein ClpE (clpE) |
| NP_816532.1 | Transcription elongation factor GreA |
| NP_815030.1 | dnak protein |
| NP_815032.1 | dnaJ protein |
| NP_815029.1 | Heat shock protein GrpE (grpE) |
| NP_814465.1 | Trigger factor (TIG) |
| NP_816273.1 | GroS (10 kDa chaperonin) |
| NP_816272.1 | GroL(60 kDa chaperonin) |
| NP_814060.1 | Fn1610 (33 kDa chaperonin) (hslO) |
| NP_814686.1 | Uracil-DNA glycosylase (ung) |
| NP_814720.1 | DNA repair protein RecN (recN) |
| Rhamnose biosynthesis | |
| NP_815854.1 | dTDP-glucose 4,6-dehydratase (rfbB) |
| NP_815853.1 | dTDP-4-dehydrorhamnose reductase (EF_2191) |
| NP_815856.1 | Glucose-1-phosphate thymidylyltransferase (rfbA) |
| Arginine metabolism | |
| NP_813908.1 | Ornithine carbamoyltransferase (arcB) |
| NP_815423.1 | Carbamoyl phosphate synthase small subunit (carA) |
| NP_814373.1 | Ornithine cyclodeaminase (EF_0616) |
| NP_813909.1 | Carbamate kinase (arcC1) |
| NP_813907.1 | Arginine deiminase (arcA) |
| NP_814719.1 | ArgR family transcriptional regulator (EF_0983) |
| Quorum sensing and pheromone associated lipoprotein | |
| NP_814911.1 | S-ribosylhomocysteinase (luxS) |
| NP_816853.1 | Pheromone cAD1 lipoprotein (EF_3256) |
| NP_814793.1 | Pheromone binding protein (EF_1060) |
| NP_815061.1 | Pheromone cAM373 lipoprotein (EF_1340) |
| Adhesion associated proteins | |
| NP_814266.1 | Aggregation substance (EF_0485) |
| NP_814342.1 | Adhesion lipoprotein (EF_0577) |
| NP_814975.1 | Fibronectin/fibrinogen binding protein (EF_1249) |
| Autolysin and D-Alanylation of teichoic acid | |
| NP_814543.1 | Autolysin (EF_0799) |
| NP_816376.1 | D-alanine--poly(phosphoribitol) ligase subunit 2 (dltC) |
| NP_816375.1 | dltD protein (dltD) |
