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Table 1 List of proteins enhanced in biofilm stages of E. faecalis SK460

From: Decoding the proteomic changes involved in the biofilm formation of Enterococcus faecalis SK460 to elucidate potential biofilm determinants

NCBI-ID Pathways/cellular processes
Amino acid metabolism
 NP_816782.1 Succinyl-diaminopimelate desuccinylase (EF_3178)
 NP_816328.1 MTA/SAH nucleosidase (pfs)
 NP_815300.1 Cysteine synthase A (cysK)
 NP_815281.1 Chorismate synthase (aroC)
 NP_815821.1 Glutamine synthetase, type I (glnA)
 NP_814529.1 S-adenosylmethionine synthetase (metK)
 NP_815283.1 3-phosphoshikimate 1-carboxyvinyltransferase (aroA)
 NP_816193.1 Serine hydroxymethyltransferase (glyA)
 NP_816069.1 Threonine synthase (thrC)
 NP_815279.1 3-deoxy-7-phosphoheptulonate synthase (EF_1562)
 NP_816700.1 Bifunctional glutamate--cysteine ligase/glutathione synthetase (gshF)
 NP_816650.1 Glutamyl-aminopeptidase (pepA)
 NP_814940.1 Acetolactate synthase (EF_1213)
 NP_815294.1 Dihydrofolate reductase (folA)
Glycolysis, citric acid cycle, pentose phosphate pathway
 NP_815638.1 Triosephosphate isomerase (tpiA)
 NP_815639.1 Phosphoglycerate kinase (pgk)
 NP_814897.1 Fructose-bisphosphate aldolase (fba)
 NP_813994.1 Phosphoglycerate mutase (gpmA)
 NP_815245.1 Glyceraldehyde 3-phosphate dehydrogenase (gap-1)
 NP_815637.1 Enolase (eno)
 NP_815137.1 Glucose-6-phosphate isomerase (pgi)
 NP_815075.1 Pyruvate dehydrogenase complex, E1 component subunit beta (pdhB)
 NP_815076.1 Dihydrolipoamide acetyltransferase (aceF)
 NP_816104.1 Pyruvate carboxylase (pycA)
 NP_813976.1 Deoxyribose-phosphate aldolase (deoC)
 NP_813986.1 Phosphopentomutase (deoB)
 NP_814782.1 6-phosphogluconate dehydrogenase (gnd)
Stress response, chaperones and DNA repair
 NP_814237.1 OsmC/Ohr family protein (EF_0453)
 NP_816831.1 Dps family protein (EF_3233)
 NP_816649.1 Thioredoxin family protein (EF_3036)
 NP_814938.1 NADH peroxidase (npr)
 NP_815447.1 General stress protein (EF_1744)
 NP_816369.1 Alkyl hydroperoxide reductase subunit C (ahpC)
 NP_813885.1 gls24 protein
 NP_816648.1 Universal stress protein (EF_3035)
 NP_816867.1 Glutathione reductase (gor)
 NP_816700.1 Bifunctional glutamate--cysteine ligase/glutathione synthetase (gshF)
 NP_816368.1 Thioredoxin reductase/glutathione-like protein (EF_2738)
 NP_814049.1 L-lactate dehydrogenase (ldh1)
 NP_816550.1 AhpC/TSA family protein (EF_2932)
 NP_815246.2 GTPase ObgE
 NP_815059.1 Thioredoxin reductase (trxB)
 NP_815353.1 Transcriptional repressor CodY (codY)
 NP_816010.1 ATP-dependent Clp protease, ATP-binding protein ClpB (clpB)
 NP_814518.1 ATP-dependent Clp protease proteolytic subunit (clpP)
 NP_816516.1 Cyclophilin type peptidyl-prolyl cis-trans isomerase (EF_2898)
 NP_814457.1 ATP-dependent Clp protease, ATP-binding protein ClpE (clpE)
 NP_816532.1 Transcription elongation factor GreA
 NP_815030.1 dnak protein
 NP_815032.1 dnaJ protein
 NP_815029.1 Heat shock protein GrpE (grpE)
 NP_814465.1 Trigger factor (TIG)
 NP_816273.1 GroS (10 kDa chaperonin)
 NP_816272.1 GroL(60 kDa chaperonin)
 NP_814060.1 Fn1610 (33 kDa chaperonin) (hslO)
 NP_814686.1 Uracil-DNA glycosylase (ung)
 NP_814720.1 DNA repair protein RecN (recN)
Rhamnose biosynthesis
 NP_815854.1 dTDP-glucose 4,6-dehydratase (rfbB)
 NP_815853.1 dTDP-4-dehydrorhamnose reductase (EF_2191)
 NP_815856.1 Glucose-1-phosphate thymidylyltransferase (rfbA)
Arginine metabolism
 NP_813908.1 Ornithine carbamoyltransferase (arcB)
 NP_815423.1 Carbamoyl phosphate synthase small subunit (carA)
 NP_814373.1 Ornithine cyclodeaminase (EF_0616)
 NP_813909.1 Carbamate kinase (arcC1)
 NP_813907.1 Arginine deiminase (arcA)
 NP_814719.1 ArgR family transcriptional regulator (EF_0983)
Quorum sensing and pheromone associated lipoprotein
 NP_814911.1 S-ribosylhomocysteinase (luxS)
 NP_816853.1 Pheromone cAD1 lipoprotein (EF_3256)
 NP_814793.1 Pheromone binding protein (EF_1060)
 NP_815061.1 Pheromone cAM373 lipoprotein (EF_1340)
Adhesion associated proteins
 NP_814266.1 Aggregation substance (EF_0485)
 NP_814342.1 Adhesion lipoprotein (EF_0577)
 NP_814975.1 Fibronectin/fibrinogen binding protein (EF_1249)
Autolysin and D-Alanylation of teichoic acid
 NP_814543.1 Autolysin (EF_0799)
 NP_816376.1 D-alanine--poly(phosphoribitol) ligase subunit 2 (dltC)
 NP_816375.1 dltD protein (dltD)