Composition and predictive functional analysis of bacterial communities inhabiting Chinese Cordyceps insight into conserved core microbiome

Table 1 Indices of bacterial community in samples of Chinese Cordyceps

	Shannon^c			Simpson			Chao			ACE			Coverage
	F^b	M	S	F	M	S	F	M	S	F	M	S	F	M	S
Q^a	3.23	3.12	3.26	0.07	0.09	0.08	107.00	102.50	107.25	106.06	104.38	102.89	0.9996	0.9997	0.9988
X	2.78	3.31	3.72	0.15	0.07	0.04	154.00	100.27	143.13	149.52	102.55	141.42	0.9989	0.9987	0.9989
Z	3.43	2.92	3.24	0.07	0.14	0.06	145.50	109.00	139.15	143.91	102.17	139.89	0.9996	0.9992	0.9986
Na	3.49	3.57	2.55	0.06	0.04	0.18	135.09	115.50	125.25	135.27	111.35	125.17	0.9987	0.9982	0.9988
Ny	3.71	2.96	3.13	0.04	0.11	0.07	173.00	117.30	79.80	133.00	119.73	84.81	0.9985	0.9982	0.9992

^aAbbreviation of the sampling sites. Counties of Qumarlêb, Xinghai County and Zadoi of Qinghai province were abbreviated as “X”, “Q” and “Z”, respectely. Biru county of Nagqu and Mainling County of Nyingchi City of Tibet Autonomous Region were abbreviated as “Na” and “Ny”, respectively
^bAbbreviation of different samples of natural Chinese Cordyceps. Fruiting body of Chinese Cordyceps, external mycelial cortices and soil adhere to Chinese Cordyceps were abbreviated as “F”, “M” and “S”, respectely
^cAll the indexes were calculated after the reads were normalized to minimum (24204 reads) in each sample

ISSN: 1471-2180