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Table 4 Summary of CDSs annotated to antibiotic resistance between SO-1977, MRSA252 and MSSA476 strains

From: Genomic analysis of methicillin-resistant Staphylococcus aureus strain SO-1977 from Sudan

No SO-1977 MRSA252 MSSA476 Seed subsystem Seed function Length (bp) Contig number
1 ✓ ✓   Peptidoglycan Biosynthesis Methicillin resistance determinant MecA, transpeptidase 2007 Contig 000034
2 ✓ ✓ ✓ Multidrug Resistance, 2-protein version Found in Gram-positive bacteria Multidrug resistance protein [function not yet clear] 648 Contig 000037
3 ✓ ✓ ✓ Multidrug Resistance, 2-protein version Found in Gram-positive bacteria Membrane component of multidrug resistance system 1932 Contig 000037
4 ✓ ✓ ✓ Multidrug Resistance, 2-protein version Found in Gram-positive bacteria TetR family regulatory protein of MDR cluster 555 Contig 000037
5 ✓    Tetracycline resistance, ribosome protection type Tetracycline resistance protein TetM 1920 Contig 000042
6 ✓    Tetracycline resistance, ribosome protection type Translation elongation factor G 2082 Contig 000014
7 ✓ ✓ ✓ Teicoplanin-resistance in Staphylococcus Teicoplanin resistance associated membrane protein TcaA 1209 Contig 000002
8 ✓ ✓ ✓ Teicoplanin-resistance in Staphylococcus Teicoplanin resistance associated membrane protein TcaB 1383 Contig 000002
9 ✓ ✓ ✓ Teicoplanin-resistance in Staphylococcus Teicoplanin-resistance associated HTH-type transcriptional regulator TcaR 456 Contig 000002
10 ✓    Quinolone resistance protein norA none 1167 Contig 000007
11 ✓ ✓   Bicyclomycin resistance protein TcaB none 1212 Contig 000002
12 ✓ ✓ ✓ Transcriptional regulator, MarR family None 456 Contig 000003
13 ✓ ✓ ✓ Transcriptional regulator, MarR family None 420 Contig 000005
14 ✓ ✓ ✓ Transcriptional regulator, MarR family None 210 Contig 000043
15 ✓ ✓ ✓ Transcriptional regulator, MarR family None 435 Contig 000030
16 ✓ ✓ ✓ Transcriptional regulator, MarR family None 441 Contig 000001
17 ✓ ✓ ✓ Transcriptional regulator,MarR family None 468 Contig 000030
18 ✓ ✓ ✓ Resistance to fluoroquinolones DNA gyrase subunit B 2403 Contig 000010
19 ✓ ✓ ✓ Resistance to fluoroquinolones DNA gyrase subunit A 2661 Contig 000011
20 ✓ ✓ ✓ Resistance to fluoroquinolones Topoisomerase IV subunit B 1998 Contig 000010
21 ✓ ✓ ✓ Resistance to fluoroquinolones Topoisomerase IV subunit A 2403 Contig 000010
22 ✓ ✓ ✓ Beta-lactamase Beta-lactamase 1500 Contig 000002
23 ✓ ✓ ✓ Beta-lactamase Beta-lactamase repressor BlaI 381 Contig 000067
24 ✓ ✓ ✓ Multidrug Resistance Efflux Pumps Acriflavin resistance protein 3168 Contig 000001
25 ✓ ✓ ✓ Multi antimicrobial extrusion protein (Na(+)/drug antiporter), MATE family of MDR efflux pumps Multidrug Resistance Efflux Pumps 1356 Contig 000005
26   ✓ ✓ Methicillin resistance in staphylococci HmrB protein involved in methicillin resistance 1600 NC_002952
27 ✓ ✓ ✓ Methicillin resistance in staphylococci Beta-lactamase repressor BlaI 381 Contig 000067
28 ✓ ✓ ✓ Methicillin resistance in staphylococci FmhA protein of FemAB family 1251 Contig 000002
29   ✓   Methicillin resistance in staphylococci LytH protein involved in methicillin resistance 1600 NC_002952
30 ✓ ✓   Methicillin resistance in staphylococci Methicillin resistance regulatory sensor-transducer MecR1 1600 Contig 000034/ NC_002952
31   ✓   Methicillin resistance in staphylococci Methicillin resistance repressor MecI 1600 NC_002952
32   ✓   Methicillin resistance in staphylococci Transposase for insertion sequence-like element IS431mec 1296 NC_002952
33   ✓   Methicillin resistance in staphylococci UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 1600 NC_002952
34 ✓ ✓ ✓ Methicillin resistance in staphylococci Beta-lactamase regulatory sensor-transducer BlaR1 1089 Contig 000067
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BMC Microbiology

ISSN: 1471-2180

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