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Table 3 Systems included Phages, prophages, transposable elements, plasmids category

From: Genomic analysis of methicillin-resistant Staphylococcus aureus strain SO-1977 from Sudan

Category Subcategory Subsystem Role
Phages, Prophages, Transposable elements, Plasmids Phages, Prophages Phage tail proteins Phage tail protein/ Phage tail length tape-measure protein
Phage replication Single stranded DNA-binding protein/ Phage replication initiation protein/ DNA polymerase III alpha subunit/ DNA helicase, phage-associated
Phage packaging machinery Phage DNA packaging/ Phage terminase, small subunit/ Phage terminase, large subunit/ Phage portal protein
Phage capsid proteins Phage capsid and scaffold/ Phage head maturation protease/ Phage major capsid protein/ Phage capsid protein
Phage lysis modules Phage lysin, N-acetylmuramoyl-L-alanine amidase/ Phage holin
Pathogenicity islands Listeria Pathogenicity
Island LIPI-1 extended
Phosphatidylinositol-specific phospholipase
Zinc metalloproteinase precursor