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Table 1 Taxonomic profile of cecal and colonic samples of CON- and TGS-fed pigs at domain level

From: Functional adaptations in the cecal and colonic metagenomes associated with the consumption of transglycosylated starch in a pig model

Domain

Meana

log2 fold change

SEb

p value

q value‡

Cecum

 Archaea

24,714

−0.018

0.067

0.789

0.930

 Bacteria

2,897,040

0.729

0.206

< 0.001

0.003

Colon

 Archaea

34,107

−0.128

0.076

0.091

0.135

 Bacteria

2,917,299

0.533

0.125

< 0.001

< 0.001

  1. ‡False discovery rate (Benjamini-Hochberg) corrected p value
  2. aNormalized reads (hit counts). Only the most abundant genera (> 0.01% of all reads) that were altered by the dietary starch source are presented (n = 8 per diet and gut site)
  3. bStandard error of the log2fold change