Table 1 Operational taxonomic units (OTUs) of mcrA gene sequences from colonic digesta of finishing pigs
From: Diversity and community of methanogens in the large intestine of finishing pigs
| OTUmcrAb | Clones | Nearest Taxon | % Sequence Identity |
|---|---|---|---|
| OTU0 | 1 | NHa | \ |
| OTU1 | 1 | Methanobrevibacter sp. WBY1 (EU919429.1) | 93 |
| OTU2 | 1 | NH | \ |
| OTU3 | 2 | Methanogenic archaeon WGK1 (GQ339874.1) | 99 |
| OTU4 | 1 | Uncultured Archaeon (AB557213.1) | 81 |
| OTU5 | 1 | Methanosphaera stadtmanae DSM 3091 (AJ584650.1) | 85 |
| OTU6 | 3 | Methanobrevibacter smithii (CP017803.1) | 95 |
| OTU7 | 1 | Methanobrevibacter sp. WBY1 (EU919429.1) | 92 |
| OTU8 | 2 | Methanosphaera stadtmanae DSM 3091 (AJ584650.1) | 84 |
| OTU9 | 101 | Methanobrevibacter sp. WBY1 (EU919429.1) | 97 |
| OTU10 | 1 | Methanobrevibacter olleyae (CP014265.1) | 92 |
| OTU11 | 1 | Candidatus Methanoplasma termitum (CP010070.1) | 88 |
| OTU12 | 2 | Candidatus Methanoplasma termitum (CP010070.1) | 84 |
| OTU13 | 4 | uncultured Methanobrevibacter sp. (JF973609.1) | 94 |
| OTU14 | 7 | Methanogenic archaeon WGK1 (GQ339874.1) | 85 |
| OTU15 | 1 | NH | \ |
| OTU16 | 1 | Methanobrevibacter sp. WBY1 (EU919429.1) | 96 |
| OTU17 | 1 | uncultured Methanomassiliicoccales archaeon (KT225447.1) | 82 |
| OTU18 | 1 | Methanobrevibacter sp. WBY1 (EU919429.1) | 96 |
| OTU19 | 1 | Methanobrevibacter sp. WBY1 (EU919429.1) | 92 |
| OTU20 | 1 | uncultured Methanomassiliicoccales archaeon (EF628111.1) | 81 |
| OTU21 | 3 | unclassified Methanomicrobiales (miscellaneous) (GQ339874.1) | 93 |
| OTU22 | 2 | Methanosphaera stadtmanae DSM 3091 (AJ584650.1) | 84 |
| OTU23 | 5 | Methanobrevibacter sp. WBY1 (EU919429.1) | 93 |
| OTU24 | 1 | uncultured Methanobrevibacter sp. (KC618377.1) | 96 |
| OTU25 | 1 | Candidatus Methanomethylophilus. (KC412011.1) | 97 |
| OTU26 | 1 | Methanobrevibacter sp. WBY1 (EU919429.1) | 90 |
| OTU27 | 1 | Methanobrevibacter sp. WBY1 (EU919429.1) | 84 |
| OTU28 | 1 | NH | \ |
| OTU29 | 1 | Methanobrevibacter sp. WBY1 (EU919429.1) | 85 |
| OTU30 | 1 | uncultured Methanoculleus sp. (AM284387.1) | 100 |
| OTU31 | 1 | Methanobrevibacter smithii (LT223564.1) | 88 |
| OTU32 | 6 | uncultured Methanomassiliicoccales archaeon (KT225454.1) | 86 |
| OTU33 | 26 | Methanosphaera stadtmanae DSM 3091 (AJ584650.1) | 88 |
| OTU34 | 1 | NH | \ |
| OTU35 | 1 | Methanobrevibacter sp. WBY1 (EU919429.1) | 93 |
| OTU36 | 24 | uncultured Methanomassiliicoccales archaeon (KT225454.1) | 85 |
| OTU37 | 1 | Methanobrevibacter sp. WBY1 (EU919429.1) | 96 |
| OTU38 | 1 | Methanogenic archaeon WGK1 (GQ339874.1) | 94 |
| OTU39 | 1 | Methanobrevibacter smithii (CP017803.1) | 84 |
| OTU40 | 1 | uncultured methanogenic archaeon (EF628097.1) | 90 |
| OTU41 | 1 | Methanobrevibacter sp. WBY1 (EU919429.1) | 88 |
| OTU42 | 1 | uncultured Methanomassiliicoccales archaeon (KT225454.1) | 75 |
| OTU43 | 2 | Methanobrevibacter sp. WBY1 (EU919429.1) | 94 |