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Table 2 Detectable fungal species and their relative proportion of reads in the samples

From: Next-generation sequencing for hypothesis-free genomic detection of invasive tropical infections in poly-microbially contaminated, formalin-fixed, paraffin-embedded tissue samples – a proof-of-principle assessment

Species Mean percentage of reads in the sample (± 1 standard deviation) Mean percentage of fungal reads in the sample (± 1 standard deviation)
Aspergillus spp. 0.001967% ± 0.001822% 2.2087% ± 1.6228%
Acremonium chrysogenum 0.000002% ± 0.000005% 0.0081% ± 0.0260%
Bipolaris oryzae 0.000110% ± 0.000218% 0.1420% ± 0.2276%
Bipolaris sorokiniana 0.000090% ± 0.000210% 0.0891% ± 0.1922%
Bipolaris zeicola 0.000085% ± 0.000187% 0.1272% ± 0.2026%
Capronia coronata 0.000046% ± 0.000063% 0.0586% ± 0.0775%
Capronia epimyces 0.000177% ± 0.000162% 0.2813% ± 0.3244%
Chaetomium globosum 0.000197% ± 0.000137% 0.2739% ± 0.2444%
Chaetomium thermophilum var. Thermophilum 0.000092% ± 0.000112% 0.1204% ± 0.1443%
Cladophialophora carrionii 0.000058% ± 0.000068% 0.1014% ± 0.1472%
Cladophialophora psammophila 0.000060% ± 0.000064% 0.0989% ± 0.1323%
Cladophialophora yegresii 0.001570% ± 0.001623% 1.2943% ± 1.1669%
Cladosporium cladosporioides 0.000017% ± 0.000045% 0.0422% ± 0.0986%
Coccidioides immitis 0.000093% ± 0.000109% 0.1463% ± 0.2174%
Coccidioides posadasii 0.000094% ± 0.000133% 0.1209% ± 0.1931%
Cryptococcus carnescens 0.000000% ± 0.000002% 0.0004% ± 0.0021%
Cryptococcus gattii 0.000021% ± 0.000043% 0.0221% ± 0.0480%
Cryptococcus neoformans 0.000041% ± 0.000061% 0.0559% ± 0.0865%
Cryptococcus stepposus 0.000001% ± 0.000006% 0.0026% ± 0.0125%
Cryptococcus tronadorensis 0.000001% ± 0.000004% 0.0009% ± 0.0042%
Cryptococcus victoriae 0.000004% ± 0.000021% 0.0043% ± 0.0209%
Cyphellophora europaea 0.000076% ± 0.000111% 0.1233% ± 0.1819%
Exophiala dermatitidis 0.000033% ± 0.000057% 0.0422% ± 0.0670%
Exophiala pisciphila 0.000001% ± 0.000002% 0.0017% ± 0.0064%
Fusarium graminearum 0.000035% ± 0.000047% 0.0440% ± 0.0743%
Fusarium pseudograminearum 0.000978% ± 0.004153% 0.8826% ± 3.3271%
Fusarium solani 0.000001% ± 0.000005% 0.0022% ± 0.0074%
Histoplasma capsulatum 0.001019% ± 0.004143% 1.6474% ± 7.0562%
Leptosphaeria maculans 0.000243% ± 0.000419% 0.3583% ± 0.4897%
Madurella mycetomatis 0.000045% ± 0.000208% 0.1752% ± 0.8338%
Mortierella verticillata 0.000001% ± 0.000004% 0.0013% ± 0.0063%
Paracoccidioides brasiliensis 0.000156% ± 0.000189% 0.1896% ± 0.2083%
Paracoccidioides sp. ‘lutzii’ 0.000132% ± 0.000156% 0.2044% ± 0.2638%
Pythium ultimum 0.000871% ± 0.004170% not classified as a fungus
Rhizopus oryzae 0.000002% ± 0.000008% 0.0022% ± 0.0104%
Setosphaeria turcica 0.000240% ± 0.000425% 0.3191% ± 0.4822%
Sporothrix schenckii 0.000005% ± 0.000021% 0.0096% ± 0.0417%