Skip to main content

Table 1 Genomic islands and prophages present in the Pseudomonas aeruginosa 24Pae112 genome

From: Genome plasticity favours double chromosomal Tn4401b-blaKPC-2 transposon insertion in the Pseudomonas aeruginosa ST235 clone

Genomic island (GI) or prophage (PP) Start End Size (bp) GenBank accession numbera % of 24Pae112 coverage % of Identity
H70 1st copy (PP) 262,871 300,420 37,549 NC_027384 80 91
H70 2nd copy (PP) 5,678,768 5,716,362 37,594 NC_027384 82 91
PM105 1st copy (PP) 2,541,628 2,580,611 38,983 NC_028667 79 98
PM105 2nd copy (PP) 2,940,222 2,979,923 39,701 NC_028667 82 97
D3 (PP) 3,879,471 3,936,450 56,979 NC_002484 44 95
F10 (PP)b 5,053,812 5,092,700 38,888 NC_007805 13 94
phiCTX (PP) 705,252 724,278 19,026 NC_003278 2 78
Pf1 (PP) 5,347,267 5,358,785 11,518 NC_001331 80 98
PAGI-1 (GI) 3,366,957 3,406,228 39,271 AF241171 76 99
PAGI-2 (GI) 2,310,022 2,363,289 53,267 AF440523 33 99
PAGI-4 (GI) 4,795,506 4,895,009 99,593 AY258138 61 99
PAGI-5 (GI)b 5,752,816 5,853,757 100,941 EF611301 70 99
PAGI-6 (GI) 6,593,897 6,630,920 37,023 EF611302 66 97
GI1 (GI)b 2,403,928 2,472,004 68,076 EU595750 91 99
PAGI-17 (GI)b 2,724,254 2,841,225 116,971 NC_018080 90 99
  1. aGenBank accession number of sequence used as reference
  2. bHarbouring transposons with resistance genes