|
Genes
|
Rate (%) among STc95 subgroups/clusters
|
|---|
|
A (n = 4)
|
D-1 (n = 28)
|
D-2/D-3b (n = 6)
|
Total (N = 38)
|
|---|
|
Adhesins
|
|
papGII
|
100
|
100
|
100
|
100
|
|
iha
|
0
|
3.6
|
100
|
18.4
|
|
Iron transport
|
|
iucC, iutA
|
25
|
92.6
|
100
|
86.8
|
|
fyuA, irp
|
100
|
100
|
100
|
100
|
|
iroN, D
|
50
|
100
|
100
|
94.7
|
|
chuA
|
100
|
100
|
100
|
100
|
|
sitA
|
75
|
100
|
100
|
97.4
|
|
Bacteriocins
|
|
cvaA, C
|
50
|
100
|
0
|
78.9
|
|
cvi
|
50
|
100
|
100
|
94.7
|
|
cia
|
0
|
100
|
0
|
73.7
|
|
imm
|
50
|
100
|
0
|
78.9
|
|
mchB, C
|
0
|
3.6
|
0
|
2.6
|
|
mchF
|
50
|
100
|
0
|
78.9
|
|
ColV plasmid related
|
|
tsh
|
25
|
0
|
0
|
2.6
|
|
etsC
|
50
|
100
|
0
|
78.9
|
|
ompTpa
|
50
|
100
|
0
|
78.9
|
|
hlyF
|
50
|
100
|
0
|
78.9
|
|
mig-14
|
50
|
100
|
0
|
78.9
|
|
issa
|
50
|
100
|
0
|
78.9
|
|
traj
|
0
|
100
|
0
|
73.7
|
|
eitB
|
25
|
0
|
0
|
2.6
|
|
Toxin
|
|
hlyC
|
0
|
0
|
100
|
15.8
|
|
clbB, N
|
100
|
0
|
0
|
10.5
|
|
sat
|
0
|
0
|
100
|
15.8
|
|
vat
|
75
|
92.6
|
100
|
92.1
|
|
senB
|
50
|
0
|
0
|
5.3
|
|
Others
|
|
epeA
|
0
|
3.6
|
0
|
2.6
|
|
ireA
|
100
|
100
|
100
|
100
|
|
gad
|
100
|
100
|
100
|
100
|
- a: plasmidic genes
- b: D-2 and D-3 clusters have been merged since they harbor identical genetic determinants except for fimH (Fig. 2)
- Only virulence genes present at least in one strain are indicated, other genes not detected are not shown [see Additional file 4]
