Fig. 2
From: Genotyping of Coxiella burnetii in sheep and goat abortion samples
The placement of the C. burnetii strain detected in this study (represented by sample 173, highlighted in grey) with the known MST genotypes. The analysis was performed using MEGA v.7 software (Kumar et al., 2016 [23]) using the Neighbor-joining method (Maximum Composite Likelihood method) with 1000 replicates. Bootstrap values > 50 are shown. The scale bar represents the number of nucleotide substitutions per site. Host and geographic origin of C. burnetii genotypes are provided, according to open source databases and previous publications (listed in Additional file 1: Table S1). Country codes used: CE-Republic of Crimea; CF-Central African Republic; CH-Switzerland; CZ-Czech Republic; D-Germany; E-Spain; ET-Ethiopia; F-France; GF-French Guiana; GR-Greece; H-Hungary; I-Italy; JP-Japan; KZ-Kazakhstan; MN-Mongolia; NL- Netherlands; NM-Namibia; P-Portugal; PL-Poland; RO-Romania; RU-Russia; S-Sweden; SA-Saudi Arabia; SE-Senegal; SK-Slovakia; TN- Tunisia; UK-United kingdom; UKR-Ukraine; US-United States; UZB-Uzbekistan. 1Reference strains: MSU Goat Q177 (Genbank accession number CP18150); Cbuk_Q154 (access no CP001020); Heizberg (access no CP014561); 14,160–002 str (access no CP014836); Namibia str (access no CP007555); Dugway (access no CP000733); CbuG_Q212 (access no CP001019); Scurry_Q217 (access no CP014565); Henzerling (RSA 331) (access no CP000890); Nine Mile (RSA 493) (access no AE016828.);Cb175-Guyana (access no HG825990); Z3055 (access no LK937696); RT-Schperling (access no CP014563)