Primer pair | Old name | Amplicon (nt) | Variable regions covered | Fungi (%) (0Â M/1Â M) | Co-Amplif. (%) (0Â M/1Â M) |
---|---|---|---|---|---|
Group S | |||||
 nu-SSU-1333-5′/nu-SSU-1647-3′ | FF390/FR-1 | 348 | V7, V8 | 80.4/92.7 | 0.2/5.0 |
 nu-SSU-1429-5′/nu-SSU-1647-3′ | SR14R/FR-1 | 235 | V8 | 76.8/86.0 | 0.8/2.5 |
 nu-SSU-0062-5′/nu-SSU-0531-3′ | TW9/GEO2 | 503 | V1, V2, V3 | 73.7/89.1 | 1.5/8.0 |
Group M | |||||
 nu-SSU-0817-5′-24/nu-SSU-1647-3′ | nu-SSU-0817-5′/FR-1 | 870 | part of V4, V5, V6, V7, V8 | 75.8/86.2 | 0.5/4.5 |
 nu-SSU-0777-5′/nu-SSU-1647-3′ | Basid 3/FR-1 | 904 | part of V4, V5, V6, V7, V8 | 68.3/80.8 | 2.9/14.7 |
Group L | |||||
 nu-SSU-0068-5′-20/nu-SSU-1647-3′ | Fun18S1/FR-1 | 1615 | all except V9 | 82.3/90.3 | 2.3/6.8 |
 nu-SSU-0550-5′/nu-SSU-1647-3′ | GEO3/FR-1 | 1133 | V4, V5, V7, V8 | 73.1/88.4 | 0.9/2.0 |