Table 1 The bioinformatics tools adopted for the prediction of secreted proteins from S. lycopersici
From: Prediction of pathogenesis-related secreted proteins from Stemphylium lycopersici
| Prediction algorithms | Objects predicted | References |
|---|---|---|
| SignalP v4.1 | Signal peptides | http://www.cbs.dtu.dk/services/SignalP/ |
| TMHMM v2.0 | Transmembrane domains | http://www.cbs.dtu.dk/services/TMHMM/ |
| big-PI Fungal Predictor | GPI-anchor site | http://mendel.imp.ac.at/gpi/fungi_server.html |
| ProtComp v9.0 | sub-cellular localization | http://www.softberry.com/ |
| TargetP v1.1 | localization | http://www.cbs.dtu.dk/services/TargetP/ |