Repeat element | Superfamilies | Number of elements | Length occupied | % of assembled genome |
---|---|---|---|---|
DNA transposon | Â | 7633 | 798,198 | 2.43 |
EnSpm/CACTA | 1640 | 198,077 | 0.60 | |
Hobo-Activator (hAT) | 1139 | 100,772 | 0.31 | |
Mariner/Tc1 | 901 | 148,218 | 0.45 | |
MuDR | 754 | 60,332 | 0.18 | |
Harbinger | 687 | 52,748 | 0.16 | |
Polinton | 476 | 59,121 | 0.18 | |
Helitron | 374 | 27,301 | 0.08 | |
Kolobok | 233 | 33,732 | 0.10 | |
Sola | 210 | 20,091 | 0.06 | |
Crypton | 146 | 10,037 | 0.03 | |
piggyBac | 132 | 8575 | 0.03 | |
Dada | 116 | 9219 | 0.03 | |
Endogenous Retrovirus | Â | 1069 | 69,620 | 0.21 |
ERV1 | 414 | 27,788 | 0.08 | |
ERV2 | 360 | 23,610 | 0.07 | |
ERV3 | 102 | 6650 | 0.02 | |
ERV4 | 73 | 4385 | 0.01 | |
LTR Retrotransposon | Â | 11,814 | 1,074,479 | 3.30 |
Gypsy | 6875 | 745,838 | 2.27 | |
Copia | 3378 | 220,000 | 0.67 | |
BEL | 989 | 58,924 | 0.18 | |
DIRS | 339 | 21,781 | 0.07 | |
Non-LTR Retrotransposon | Â | 4109 | 297,677 | 0.91 |
L1 | 1049 | 66,695 | 0.20 | |
CR1 | 538 | 44,451 | 0.14 | |
R1 | 318 | 24,513 | 0.07 | |
Jockey | 287 | 21,278 | 0.06 | |
RTE | 232 | 15,218 | 0.05 | |
Tx1 | 211 | 14,176 | 0.04 | |
I | 175 | 11,361 | 0.03 | |
Tad1 | 161 | 11,574 | 0.04 | |
L2 | 121 | 8125 | 0.02 | |
RTEX | 106 | 8159 | 0.02 | |
Pseudogene | Â | 94 | 16,566 | 0.05 |
rRNA | 57 | 13,659 | 0.04 | |
tRNA | 37 | 2907 | 0.01 | |
Satellite | Â | 145 | 14,774 | 0.04 |
MSAT | 40 | 6529 | 0.02 | |
SAT | 63 | 4970 | 0.01 | |
Integrated Virus | Â | 32 | 1760 | 0.005 |
Caulimoviridae | 29 | 1516 | 0.004 | |
DNA Virus | 3 | 244 | 0.001 | |
TOTAL | 24,896 | 2,273,074 | 6.95 |