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Table 2 Summary of repetitive elements present in the genome of A. solani HWC-168

From: Genome sequence of the potato pathogenic fungus Alternaria solani HWC-168 reveals clues for its conidiation and virulence

Repeat element Superfamilies Number of elements Length occupied % of assembled genome
DNA transposon   7633 798,198 2.43
EnSpm/CACTA 1640 198,077 0.60
Hobo-Activator (hAT) 1139 100,772 0.31
Mariner/Tc1 901 148,218 0.45
MuDR 754 60,332 0.18
Harbinger 687 52,748 0.16
Polinton 476 59,121 0.18
Helitron 374 27,301 0.08
Kolobok 233 33,732 0.10
Sola 210 20,091 0.06
Crypton 146 10,037 0.03
piggyBac 132 8575 0.03
Dada 116 9219 0.03
Endogenous Retrovirus   1069 69,620 0.21
ERV1 414 27,788 0.08
ERV2 360 23,610 0.07
ERV3 102 6650 0.02
ERV4 73 4385 0.01
LTR Retrotransposon   11,814 1,074,479 3.30
Gypsy 6875 745,838 2.27
Copia 3378 220,000 0.67
BEL 989 58,924 0.18
DIRS 339 21,781 0.07
Non-LTR Retrotransposon   4109 297,677 0.91
L1 1049 66,695 0.20
CR1 538 44,451 0.14
R1 318 24,513 0.07
Jockey 287 21,278 0.06
RTE 232 15,218 0.05
Tx1 211 14,176 0.04
I 175 11,361 0.03
Tad1 161 11,574 0.04
L2 121 8125 0.02
RTEX 106 8159 0.02
Pseudogene   94 16,566 0.05
rRNA 57 13,659 0.04
tRNA 37 2907 0.01
Satellite   145 14,774 0.04
MSAT 40 6529 0.02
SAT 63 4970 0.01
Integrated Virus   32 1760 0.005
Caulimoviridae 29 1516 0.004
DNA Virus 3 244 0.001
TOTAL 24,896 2,273,074 6.95