Skip to main content

Advertisement

Table 5 Ranges of % nucleotide and translated protein sequence identities compared between PRV sequences used for the phylogenetic analysis and between Lopburi viruses and 5 most closely related strains

From: Mass spectrometry-based identification and whole-genome characterisation of the first pteropine orthoreovirus isolated from monkey faeces in Thailand

Segment % nucleotide identity % amino acid identity
All strains Pulau Kampar Melaka Sikamat Cangyuan All strains Pulau Kampar Melaka Sikamat Cangyuan
L1 80.6–99.9 93.4–93.5 92.3 92.7 92.9 91.1–99.9 97.7–97.8 97.5 97.1–97.2 97.7–97.8
L2 83.2–100 94 97.8 97.7 98.2 95.5–100 98.6 99.2 99.2 99.6
L3 84.0–99.8 92.6–92.7 94.2–94.3 97.9 96.7 96.1–99.7 98.4–98.5 98.8–98.9 99.3 99.3
M1 81.5–99.9 91–91.1 96.1–96.2 95.8 92.6–92.7 92.0–99.7 96.5–96.8 98.3–98.6 98.6–98.9 97.8–98
M2 77.6–99.7 93.3–93.4 78.1–78.2 95.6–95.7 78.5 93.6–100 99.7 94.9 100 95.1
M3 81.1–100 93.5 93.4 93 98.9 90.3–100 98.2 98.4 97.9 99.3
S1 p10 65.9–100 88.8 82.6 97.5 96.5 87.1 69.4–100 98.9 93.6 100 98.9 98.9
S1 p17 54.7–100 86.9 75.5 97.4 97.4 87.8 44.5–100 91.6 82.5 96.5 96.5 90.9
S1 σC 47.6–100 76.4 57.3 94.6 93.8 76.3 36.4–100 78.4 55.4 95.4 93.9 79
S2 82.8–100 91.4 98.6 94.7 98.3 94.6 96.3–100 98.3 99.7 99.2 99.5 98.5
S3 84.1–100 93 92.3 95.4 92.3 97.6 93.7–100 98.9 98.6 99.7 99.1 98.9
S4 81.3–99.8 92.1–92.3 91.9 95–95.2 96.8–97 96.3–96.5 88.6–99.7 92.7–93 96.3–96.6 98–98.3 98.8–99.1 99.1–99.4