Table 5 Ranges of % nucleotide and translated protein sequence identities compared between PRV sequences used for the phylogenetic analysis and between Lopburi viruses and 5 most closely related strains
Segment | % nucleotide identity | % amino acid identity | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
All strains | Pulau | Kampar | Melaka | Sikamat | Cangyuan | All strains | Pulau | Kampar | Melaka | Sikamat | Cangyuan | |
L1 | 80.6–99.9 | 93.4–93.5 | 92.3 | 92.7 | – | 92.9 | 91.1–99.9 | 97.7–97.8 | 97.5 | 97.1–97.2 | – | 97.7–97.8 |
L2 | 83.2–100 | 94 | 97.8 | 97.7 | – | 98.2 | 95.5–100 | 98.6 | 99.2 | 99.2 | – | 99.6 |
L3 | 84.0–99.8 | 92.6–92.7 | 94.2–94.3 | 97.9 | – | 96.7 | 96.1–99.7 | 98.4–98.5 | 98.8–98.9 | 99.3 | – | 99.3 |
M1 | 81.5–99.9 | 91–91.1 | 96.1–96.2 | 95.8 | – | 92.6–92.7 | 92.0–99.7 | 96.5–96.8 | 98.3–98.6 | 98.6–98.9 | – | 97.8–98 |
M2 | 77.6–99.7 | 93.3–93.4 | 78.1–78.2 | 95.6–95.7 | – | 78.5 | 93.6–100 | 99.7 | 94.9 | 100 | – | 95.1 |
M3 | 81.1–100 | 93.5 | 93.4 | 93 | – | 98.9 | 90.3–100 | 98.2 | 98.4 | 97.9 | – | 99.3 |
S1 p10 | 65.9–100 | 88.8 | 82.6 | 97.5 | 96.5 | 87.1 | 69.4–100 | 98.9 | 93.6 | 100 | 98.9 | 98.9 |
S1 p17 | 54.7–100 | 86.9 | 75.5 | 97.4 | 97.4 | 87.8 | 44.5–100 | 91.6 | 82.5 | 96.5 | 96.5 | 90.9 |
S1 σC | 47.6–100 | 76.4 | 57.3 | 94.6 | 93.8 | 76.3 | 36.4–100 | 78.4 | 55.4 | 95.4 | 93.9 | 79 |
S2 | 82.8–100 | 91.4 | 98.6 | 94.7 | 98.3 | 94.6 | 96.3–100 | 98.3 | 99.7 | 99.2 | 99.5 | 98.5 |
S3 | 84.1–100 | 93 | 92.3 | 95.4 | 92.3 | 97.6 | 93.7–100 | 98.9 | 98.6 | 99.7 | 99.1 | 98.9 |
S4 | 81.3–99.8 | 92.1–92.3 | 91.9 | 95–95.2 | 96.8–97 | 96.3–96.5 | 88.6–99.7 | 92.7–93 | 96.3–96.6 | 98–98.3 | 98.8–99.1 | 99.1–99.4 |