From: Identification and antibiotic susceptibility of lactobacilli isolated from turkeys
Determining resistance to | Target gene | Primer sequence (5’→3’) | Amplicon size (bp) | Annealing temperature (°C) | Reference |
---|---|---|---|---|---|
tetracyclines | tetM | GTG GAC AAA GGT ACA ACG AG CGG TAA AGT TCG TCA CAC AC | 406 | 60 | [20] |
tetK | GAT CAA TTG TAG CTT TAG GTG AAG G TTT TGT TGA TTT ACC AGG TAC CAT T | 155 | 60 | ||
tetL | TGG TGG AAT GAT AGC CCA TT CAG GAA TGA CAG CAC GCT AA | 229 | 60 | ||
tetO | AAC TTA GGC ATT CTG GCT CAC TCC CAC TGT TCC ATA TCG TCA | 515 | 60 | ||
tetW | GAG AGC CTG CTA TAT GCC AGC GGG CGT ATC CAC AAT GTT AAC | 168 | 64 | [50] | |
macrolides and lincosamides | ermA | CCC GAA AAA TAC GCA AAA TTT CAT CCC TGT TTA CCC ATT TAT AAA CG | 590 | 60 | [20] |
ermB | TGG TAT TCC AAA TGC GTA ATG CTG TGG TAT GGC GGG TAA GT | 745 | 60 | ||
mefA/E | CAA TAT GGG CAG GGC AAG AAG CTG TTC CAA TGC TAC GC | 317 | 60 | ||
ermC | AAT CGT CAA TTC CTG CAT GT TAATCGTGGAATACGGGTTTG | 299 | 58 | [35] | |
lnuA | GGT GGC TGG GGG GTA GAT GTA TTA ACT GG GCT TCT TTT GAA ATA CAT GGT ATT TTT CGA TC | 323 | 61 | [51] | |
aminoglycosides | aac(6’)-Ie-aph(2”)-Ia | CAG AGC CTT GGG AAG ATG AAG CCT CGT GTA ATT CAT GTT CTG GC | 348 | 56 | [21] |
aph3IIIa | GGC TAA AAT GAG AAT ATC ACC GG CTT TAA AAA ATC ATA CAG CTC GCG | 523 | |||
ant(4’)-Ia | CAA ACT GCT AAA TCG GTA GAA GCC GGA AAG TTG ACC AGA CAT TAC GAA CT | 294 | |||
aph(2”)-Ic | CCA CAA TGA TAA TGA CTC AGT TCC C CCA CAG CTT CCG ATA GCA AGA G | 444 | |||
aph(2”)-Id | GTG GTT TTT ACA GGA ATG CCA TC CCC TCT TCA TAC CAA TCC ATA TAA CC | 641 | |||
ant(6)-Ia | CGG GAG AAT GGG AGA CTT TG CTG TGG CTC CAC AAT CTG AT | 563 | 56 | [52] | |
aac(6’)-Ii | TGGCCGGAAGAATATGGAGA GCATTTGGTAAGACACCTACG | 410 | 55 | ||
aadE | ATG GAA TTA TTC CCA CCT GA TCA AAA CCC CTA TTA AAG CC | 1060 | 51 | [43] | |
chloramphenicol | cat | TAA GGT TAT TGG GAT AAG TTA GCA TGR TAA CCA TCA CAW AC | 340 | 54 | [23] |
tiamulin | lsaE | TGT CAA ATG GTG AGC AAA CG TGT AAA ACG GCT TCC TGA TG | 496 | 54 | [53] |
penicillins | blaZ | ACT TCA ACA CCT GCT GCT TTC TAG GTT CAG ATT GGC CCT TAG | 240 | 60 | [54] |
mecA | AGT TCT GCA GTA CCG GAT TTG C AAA ATC GAT GGT AAA GGT TGG C | 533 | 55 | [55] | |
int-Tn (Tn916/Tn1545) | GCGTGATTGTATCTCACT GACGCTCCTGTTGCTTCT | 1028 | 55 | [49] |