Skip to main content

Table 1 Web of Microbes Data Examples

From: Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes

Field/Use-case Example in WoM WoM featurea
Ecosystem biology Biocrust bacteria interactions with Microcoleus vaginatus metabolites [18] The Web, One Metabolite
Metabolic responses to metabolite composition Comparison of Synechococcus sp. in four types of growth media [8] One Organism
Environmental microbiology Soil bacteria carbon utilization in complex culture media (see Additional file 1: Appendix file methods) One Environment, EUS, OCS-FME, OCS-FMC
Biotechnologies Exometabolomics for design of synthetic mutualism systems [21] OCS-FME
Native consortia Biocrust porewater native microbial community incubations [18] One Environment
Metabolic changes over time Triculture of soil microbes in amino acid medium [19] One Environment
  1. aThe Web, One Metabolite, One Organism and One Environment are all viewing features available on the Web of Microbes. The EUS, OCS-FME and OCS-FMC are compatibility scores available on the One Environment view. All features and WoM terminology are defined in Additional file 2: Appendix A