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Table 1 Summary comparison of the models designed for S. lividans

From: Modelling the metabolism of protein secretion through the Tat route in Streptomyces lividans

 

iJV710

iJV1220

Number of genes

0 (710)a

1220b

Number of reactions

713

1446

Number of metabolites

502

1867

Mass balanced

No

Yes

Amylase

Yes

Yes

Agarase

Yes

Yes

mRNA decay

No

Yes

Branched-chain fatty acids

No

Yes

Menaquinone biosynthesis

No

Yes

Updated biomass equation

No

Yes

Updated energy parameters

No

Yes

  1. aThe model contains no gene information, 710 genes are assumed since it is based on iIL708 and adds reactions corresponding to 2 new genes
  2. biJV1220 is based on iMK1208, removing 4 genes, and adding genes for amlB, dagA, RNAse, PNPase and the secretion complexes