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Table 1 Accession numbers of the genomes of the Azospirillum sp., strains used in this study and the predicted modular signaling proteins involved in c-di-GMP metabolism

From: In silico comparative analysis of GGDEF and EAL domain signaling proteins from the Azospirillum genomes

Strain Chromosome Size (Mbs) aCDS
bDGC/PDE/Hybrid
p1-Size (Mbs) CDS DGC/PDE/Hybrid p2 Size (Mbs) CDS DGC/PDE/Hybrid p3- Size (Mbs) CDS DGC/PDE/Hybrid p4- Size (Mbs) CDS DGC/PDE/Hybrid p5-Size (Mbs) CDS DGC/PDE/Hybrid p6- Size (Mbs) CDS DGC/PDE/Hybrid p7- Size (Mbs) CDS DGC/PDE/Hybrid cTotal Number R
A. bra. Sp245 NC_016617.1
3.01
2, 690
10/3/6
NC_016594.1
1.76
1748
7/0/2
NC_016618.1
0.912
884
1/1/0
NC_016595.1
0.778
808
1/070
NC_016596.1
0.690
671
1/1/2
NC_016619
0.191
162
-
NC_016597.1
0.167
125
-
35 6
A. bra. Sp7 NZ_CP012914
3.01
2690
10/3/5
NZ_CP012915.1
1.75
629
7/0/2
NZ_CP012916.1
0.819
627
1/0/0
NZ_CP012917.1
0.645
555
1/1/2
NZ_CP012918.1
0.206
171
-
NZ_CP012919.1
0.159
110
-
_ _ 34 7
A. bra. Az39 NZ_CP007793.1
3.06
2767
10/3/6
NZ_CP007794.1
1.9
1610
7/1/2
NZ_CP007795.1
0.933
754
1/0/0
NZ_CP007796.1
0.686
533
-
NZ_CP007797.1
0.641
558
1/1/2
NZ_CP007798.1
0.163
107
-
_ _ 35 8
A. lip 4B NC_016622.1
2.99
2693
11/4/10
NC_016585.1
1.04
867
1/0/0
NC_016586.1
0.750
619
2/0/2
NC_016623.1
0.648
515
3/1/2
NC_016587.1
0.645
555
1/0/1
NC_016624.1
0.478
384
1/0/1
NC_016588.1
0.295
220
-
40 6
Azo B510 NC_013854.1
3.3
2994
13/4/9
NC_013855.1
1.46
1127
2/0/4
NC_013856.1
0.723
613
1/0/0
NC_013857.1
0.681
532
3/1/2
NC_013858.1
0.628
536
0/0/1
NC_013859.1
0.537
422
0/0/1
NC_013860.1
0.261
181
-
41 9
A. thio BV-S NZ_CP012401.1
3.04
17/4/9
NZ_CP012402.1
1.35
5/1/1
NZ_CP012403.1
0.879
1/0/0
NZ_CP012404.1
0.712
0/0/2
NZ_CP012405.1
0518
NZ_CP012406.1
0.694
0/0/1
NZ_CP012407.1
0.330
NZ_CP012408.1
0.083
35 10–11
A. halo
DSM3675
NZ_AUCF00000000.1
5.26
4680
– – 38 12
A. oryzae
A2P
NZ_FXAK00000000.1
7.67
6669
40 14
A. humi
SgZ-5
NZ_CP015285.1
3.18
2846
29 13
  1. A.bra = A. brasilense, A. lip = A lipoferum, Azo = Azospirillum B510, A. thiophilum BV-S, A. halopraeferens DMS3675, A. oryzae A2P, and A. humicireducens SgZ.5
  2. Chr Chromosome, p1 plasmid 1, p2 plasmid 2, p3 plasmid 3, p4 plasmid 4, p5 plasmid 5, p6 plasmid 6. – no plasmid. R references
  3. aTotal number of protein-coding genes
  4. bNumber of GGDEF, EAL and hybrids proteins per replicon
  5. cTotal number of GGDEF, EAL and hybrids proteins per genome