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Table 2 Summary of the metagenomic sequencing

From: Metagenomic analysis of microbial community and function involved in cd-contaminated soil

Category

S1

S2

Raw reads

100,895,940

94,080,764

Clean reads

96,712,790

90,359,739

Assembled contigs

122,977

40,775

Largest contig length (bp)

47,750

144,494

Contig_N50 lengtha (bp)

1014

949

Contig_N90 lengthb (bp)

553

548

Predicted ORFs

204,739

68,701

  1. aContig_N50 length, the length of the smallest contig in the set of largest contigs that have a combined length that represents at least 50% of the assembly [74]
  2. bContig_N90 length, the length of the smallest contig in the set of largest contigs that have a combined length that represents at least 90% of the assembly [74]
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BMC Microbiology

ISSN: 1471-2180

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