Skip to main content

Table 2 BCARR-boxes observed in high and low repressive genes in response to peptides

From: Genome-wide motif predictions of BCARR-box in the amino-acid repressed genes of Lactobacillus helveticus CM4

NO Repression (%) ORF No Gene BCARR-box sequence Palindromic pair ΔG (kcal/mol)
<Highly repressed genes>
1 91.0 1099 med GAAAATAATGTTCTT 4 1.15
2 91.0 1104 putative AAAAAAGCCATTCTT 5 −4.2
3 89.0 661 pepD AAAAATACTTTAATT 4 0.61
4 91.0 765 himM AAAAGTATTGTCTTT 3 −0.64
5 87.0 1621 putative AATACAAGATATTGT 3 −3.6
6 93.0 724 pepO2 AAAAAATGCTTTTAT 5 −0.74
7 84.0 1102 putative TAAAAAAATATTATT 4 0.94
8 83.0 737 hpt TGAAAAAGTATTATT 3 0.86
9 93.0 726 potE AAAAAATCATGTTTT 5 −0.44
10 91.0 769 putative AAAAAATCTATTTTT 5 −2.45
11 93.0 1032 ddpA AAAATTCTAAAATAT 4 0.18
12 85.0 738 putative AAAGTAAGCGTTTTA 3 1.66
13 87.0 1113 purK AAAATACCTTGTATT 4 −1.05
14 85.0 1219 prtH, prtP AAATTAAATGTATTT 5 1.71
15 90.0 513 nlpA AGAAATACAATTATT 4 0.58
16 85.0 123 putative ACAAAAATTATTCTT 5 0.95
17 86.0 670 putative AGAAATAGATTTTTT 4 0.04
18 97.0 464 dapF AAAATCACTTTTTTA 4 0.17
AV 88.9     4.1 −0.24
SD 3.9     0.8 1.68
<Lowly repressed genes>
1 49.0 807 putative AACAATAGAATTATA 4 0.67
2 48.0 537 citT AAAAATAACTTTATT 4 0.26
3 41.0 1582 putative TAATAAACTGTACTT 4 1.77
4 38.0 921 putative AAAACATCTTTTTTG 4 0.25
5 35.0 763 putative AAAAATGCTTGACTT 2  
6 34.0 825 putative ATTAATAGGTTTTCT 3 0.95
7 32.0 635 mdlB, cydC, sunT AAAAACACTTTAATT 4 1.26
8 32.0 1590 putative AAAACAGTTTTCTTA 3  
9 27.0 745 pepV AAAAACAAATTTATT 4 −0.04
10 25.0 924 pepO AAAAAACCTGTTAAC 2 0.86
11 24.0 2167 prtD AAAAAATCCTTTCTT 5 0.75
12 34.0 954 dppD AAAAAAGCTATAAAT 2  
13 47.0 1208 hflC AACAACAGGACTTTA 2 2.14
14 46.0 1254 putative AAAATAACTATTAAT 3 0.08
15 34.0 201 deoR AAAAATACATTGTTA 3 0.76
16 32.0 1593 lytR AAAAAACGTCATATT 3 2.75
17 30.0 1535 putative AAAAGTAGTTTTCAT 3  
18 46.0 1151 putative AAAAAATTTTTTTGT 5 −0.56
AV 36.3     3.3 0.85
SD 8.1     1.0 0.90