Table 2 BCARR-boxes observed in high and low repressive genes in response to peptides
NO | Repression (%) | ORF No | Gene | BCARR-box sequence | Palindromic pair | ΔG (kcal/mol) |
|---|---|---|---|---|---|---|
<Highly repressed genes> | ||||||
1 | 91.0 | 1099 | med | GAAAATAATGTTCTT | 4 | 1.15 |
2 | 91.0 | 1104 | putative | AAAAAAGCCATTCTT | 5 | −4.2 |
3 | 89.0 | 661 | pepD | AAAAATACTTTAATT | 4 | 0.61 |
4 | 91.0 | 765 | himM | AAAAGTATTGTCTTT | 3 | −0.64 |
5 | 87.0 | 1621 | putative | AATACAAGATATTGT | 3 | −3.6 |
6 | 93.0 | 724 | pepO2 | AAAAAATGCTTTTAT | 5 | −0.74 |
7 | 84.0 | 1102 | putative | TAAAAAAATATTATT | 4 | 0.94 |
8 | 83.0 | 737 | hpt | TGAAAAAGTATTATT | 3 | 0.86 |
9 | 93.0 | 726 | potE | AAAAAATCATGTTTT | 5 | −0.44 |
10 | 91.0 | 769 | putative | AAAAAATCTATTTTT | 5 | −2.45 |
11 | 93.0 | 1032 | ddpA | AAAATTCTAAAATAT | 4 | 0.18 |
12 | 85.0 | 738 | putative | AAAGTAAGCGTTTTA | 3 | 1.66 |
13 | 87.0 | 1113 | purK | AAAATACCTTGTATT | 4 | −1.05 |
14 | 85.0 | 1219 | prtH, prtP | AAATTAAATGTATTT | 5 | 1.71 |
15 | 90.0 | 513 | nlpA | AGAAATACAATTATT | 4 | 0.58 |
16 | 85.0 | 123 | putative | ACAAAAATTATTCTT | 5 | 0.95 |
17 | 86.0 | 670 | putative | AGAAATAGATTTTTT | 4 | 0.04 |
18 | 97.0 | 464 | dapF | AAAATCACTTTTTTA | 4 | 0.17 |
AV | 88.9 |  |  |  | 4.1 | −0.24 |
SD | 3.9 | Â | Â | Â | 0.8 | 1.68 |
<Lowly repressed genes> | ||||||
1 | 49.0 | 807 | putative | AACAATAGAATTATA | 4 | 0.67 |
2 | 48.0 | 537 | citT | AAAAATAACTTTATT | 4 | 0.26 |
3 | 41.0 | 1582 | putative | TAATAAACTGTACTT | 4 | 1.77 |
4 | 38.0 | 921 | putative | AAAACATCTTTTTTG | 4 | 0.25 |
5 | 35.0 | 763 | putative | AAAAATGCTTGACTT | 2 | Â |
6 | 34.0 | 825 | putative | ATTAATAGGTTTTCT | 3 | 0.95 |
7 | 32.0 | 635 | mdlB, cydC, sunT | AAAAACACTTTAATT | 4 | 1.26 |
8 | 32.0 | 1590 | putative | AAAACAGTTTTCTTA | 3 | Â |
9 | 27.0 | 745 | pepV | AAAAACAAATTTATT | 4 | −0.04 |
10 | 25.0 | 924 | pepO | AAAAAACCTGTTAAC | 2 | 0.86 |
11 | 24.0 | 2167 | prtD | AAAAAATCCTTTCTT | 5 | 0.75 |
12 | 34.0 | 954 | dppD | AAAAAAGCTATAAAT | 2 | Â |
13 | 47.0 | 1208 | hflC | AACAACAGGACTTTA | 2 | 2.14 |
14 | 46.0 | 1254 | putative | AAAATAACTATTAAT | 3 | 0.08 |
15 | 34.0 | 201 | deoR | AAAAATACATTGTTA | 3 | 0.76 |
16 | 32.0 | 1593 | lytR | AAAAAACGTCATATT | 3 | 2.75 |
17 | 30.0 | 1535 | putative | AAAAGTAGTTTTCAT | 3 | Â |
18 | 46.0 | 1151 | putative | AAAAAATTTTTTTGT | 5 | −0.56 |
AV | 36.3 | Â | Â | Â | 3.3 | 0.85 |
SD | 8.1 | Â | Â | Â | 1.0 | 0.90 |